X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 91.29 α = 90
b = 91.29 β = 90
c = 169.37 γ = 120
Symmetry
Space Group H 3

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
ROTATING ANODE RIGAKU FR-D -- -- --

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.9 29 99.8 0.1 -- -- 3.12 -- 11653 -- 1.0 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.9 71.74 -- -- -- 11096 555 99.7 -- 0.21655 0.21303 0.28792 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.9 2.975 -- 44 827 0.416 0.494 -- 100.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 59.203
Anisotropic B[1][1] -0.18
Anisotropic B[1][2] -0.09
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] -0.18
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 0.6
RMS Deviations
Key Refinement Restraint Deviation
r_scbond_other 2.866
r_mcbond_it 3.565
r_dihedral_angle_3_deg 19.692
r_dihedral_angle_1_deg 7.204
r_scbond_it 2.865
r_angle_refined_deg 1.496
r_gen_planes_other 0.004
r_long_range_B_refined 8.279
r_mcangle_it 6.01
r_long_range_B_other 8.278
r_dihedral_angle_4_deg 20.353
r_bond_refined_d 0.01
r_dihedral_angle_2_deg 38.286
r_gen_planes_refined 0.007
r_mcbond_other 3.545
r_chiral_restr 0.079
r_mcangle_other 6.013
r_scangle_other 4.849
r_angle_other_deg 0.986
r_bond_other_d 0.002
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 3646
Nucleic Acid Atoms 0
Heterogen Atoms 71
Solvent Atoms 0

Software

Software
Software Name Purpose
REFMAC refinement version: 5.8.0135