X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
pH 7
Temperature 293.0
Details 0.2 M Ammonium tartrate dibasic, 20% w/v PEG 3,350

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 58.64 α = 90
b = 73.7 β = 113.15
c = 64.63 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD MARMOSAIC 300 mm CCD -- 2014-06-30
Diffraction Radiation
Monochromator Protocol
Si 111 Channel SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 23-ID-B 1.033 APS 23-ID-B

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.63 59.44 97.3 0.095 0.095 -- 3.9 -- 60880 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.63 1.66 96.2 0.562 -- 2.52 7.7 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.634 24.174 -- 1.35 -- 60880 3083 97.27 -- 0.1848 0.1835 0.2093 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.6343 1.6598 -- 148 2345 0.2509 0.2834 -- 89.0
X Ray Diffraction 1.6598 1.687 -- 124 2586 0.2403 0.2839 -- 96.0
X Ray Diffraction 1.687 1.7161 -- 115 2598 0.2248 0.2462 -- 96.0
X Ray Diffraction 1.7161 1.7473 -- 131 2622 0.2204 0.2449 -- 97.0
X Ray Diffraction 1.7473 1.7809 -- 133 2607 0.213 0.2379 -- 96.0
X Ray Diffraction 1.7809 1.8172 -- 155 2567 0.1976 0.2399 -- 97.0
X Ray Diffraction 1.8172 1.8567 -- 113 2649 0.1959 0.2354 -- 97.0
X Ray Diffraction 1.8567 1.8999 -- 138 2578 0.1984 0.2542 -- 97.0
X Ray Diffraction 1.8999 1.9474 -- 156 2621 0.198 0.2285 -- 97.0
X Ray Diffraction 1.9474 2.0 -- 132 2643 0.1909 0.2144 -- 98.0
X Ray Diffraction 2.0 2.0589 -- 147 2613 0.1914 0.2241 -- 97.0
X Ray Diffraction 2.0589 2.1253 -- 143 2625 0.1905 0.2147 -- 98.0
X Ray Diffraction 2.1253 2.2012 -- 147 2608 0.1877 0.2184 -- 98.0
X Ray Diffraction 2.2012 2.2893 -- 147 2663 0.1877 0.2124 -- 98.0
X Ray Diffraction 2.2893 2.3934 -- 143 2661 0.191 0.2158 -- 98.0
X Ray Diffraction 2.3934 2.5194 -- 129 2665 0.1973 0.2192 -- 98.0
X Ray Diffraction 2.5194 2.6771 -- 161 2629 0.1976 0.2352 -- 98.0
X Ray Diffraction 2.6771 2.8835 -- 161 2663 0.1963 0.2288 -- 99.0
X Ray Diffraction 2.8835 3.1731 -- 132 2700 0.1994 0.2145 -- 99.0
X Ray Diffraction 3.1731 3.6309 -- 139 2700 0.1847 0.2059 -- 99.0
X Ray Diffraction 3.6309 4.5695 -- 141 2723 0.1497 0.1772 -- 99.0
X Ray Diffraction 4.5695 24.1763 -- 148 2731 0.1509 0.1615 -- 98.0
RMS Deviations
Key Refinement Restraint Deviation
f_chiral_restr 0.045
f_angle_d 1.111
f_plane_restr 0.006
f_bond_d 0.007
f_dihedral_angle_d 13.926
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 2886
Nucleic Acid Atoms 0
Heterogen Atoms 64
Solvent Atoms 151

Software

Software
Software Name Purpose
PHENIX refinement version: 1.9_1692
HKL-3000 data reduction
HKL-3000 data scaling
HKL-3000 phasing