X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
pH 7
Temperature 289.0
Details 2.8M Sodium Acetate

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 103.07 α = 90
b = 130.94 β = 90
c = 85.99 γ = 90
Symmetry
Space Group P 21 21 2

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315r -- 2015-03-15
Diffraction Radiation
Monochromator Protocol
Si 111 SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 19-ID 0.97918 APS 19-ID

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.92 36.5 100.0 0.093 -- -- 6.1 -- 89349 0.0 -3.0 --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.92 1.95 100.0 0.771 -- 2.6 6.1 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
SAD 1.92 36.41 -- 1.34 -- 88553 4376 99.05 -- 0.1805 0.179 0.2101 Random selection
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.9199 1.9417 -- 144 2352 0.2571 0.3026 -- 85.0
X Ray Diffraction 1.9417 1.9646 -- 158 2571 0.2508 0.2767 -- 93.0
X Ray Diffraction 1.9646 1.9885 -- 153 2747 0.2356 0.2695 -- 98.0
X Ray Diffraction 1.9885 2.0137 -- 146 2758 0.2246 0.2447 -- 99.0
X Ray Diffraction 2.0137 2.0402 -- 166 2771 0.2212 0.2526 -- 100.0
X Ray Diffraction 2.0402 2.0681 -- 129 2804 0.2228 0.2671 -- 100.0
X Ray Diffraction 2.0681 2.0977 -- 125 2834 0.2197 0.2499 -- 100.0
X Ray Diffraction 2.0977 2.129 -- 137 2785 0.2114 0.2116 -- 100.0
X Ray Diffraction 2.129 2.1623 -- 150 2819 0.1958 0.2484 -- 100.0
X Ray Diffraction 2.1623 2.1977 -- 143 2808 0.1921 0.2204 -- 100.0
X Ray Diffraction 2.1977 2.2356 -- 150 2790 0.1974 0.2363 -- 100.0
X Ray Diffraction 2.2356 2.2762 -- 155 2803 0.19 0.2509 -- 100.0
X Ray Diffraction 2.2762 2.32 -- 128 2802 0.1912 0.2183 -- 100.0
X Ray Diffraction 2.32 2.3674 -- 131 2803 0.1813 0.2387 -- 100.0
X Ray Diffraction 2.3674 2.4188 -- 163 2812 0.1828 0.2177 -- 100.0
X Ray Diffraction 2.4188 2.4751 -- 156 2803 0.1742 0.2187 -- 100.0
X Ray Diffraction 2.4751 2.537 -- 136 2834 0.1803 0.1982 -- 100.0
X Ray Diffraction 2.537 2.6055 -- 147 2825 0.1878 0.252 -- 100.0
X Ray Diffraction 2.6055 2.6822 -- 142 2812 0.1791 0.2177 -- 100.0
X Ray Diffraction 2.6822 2.7687 -- 132 2817 0.1792 0.1892 -- 100.0
X Ray Diffraction 2.7687 2.8676 -- 183 2820 0.1767 0.2316 -- 100.0
X Ray Diffraction 2.8676 2.9824 -- 139 2840 0.1819 0.1872 -- 100.0
X Ray Diffraction 2.9824 3.1181 -- 152 2822 0.1818 0.223 -- 100.0
X Ray Diffraction 3.1181 3.2824 -- 150 2851 0.17 0.1961 -- 100.0
X Ray Diffraction 3.2824 3.4879 -- 134 2850 0.1532 0.1934 -- 100.0
X Ray Diffraction 3.4879 3.7569 -- 141 2872 0.143 0.1561 -- 100.0
X Ray Diffraction 3.7569 4.1345 -- 140 2891 0.1426 0.1554 -- 100.0
X Ray Diffraction 4.1345 4.7317 -- 129 2903 0.14 0.178 -- 100.0
X Ray Diffraction 4.7317 5.9572 -- 146 2935 0.1718 0.161 -- 100.0
X Ray Diffraction 5.9572 36.417 -- 171 3043 0.2053 0.2406 -- 100.0
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.005
f_chiral_restr 0.075
f_dihedral_angle_d 12.092
f_bond_d 0.007
f_angle_d 1.11
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 7044
Nucleic Acid Atoms 0
Heterogen Atoms 36
Solvent Atoms 553

Software

Software
Software Name Purpose
PHENIX refinement version: 1.8.2_1309
SBC-Collect data collection
HKL-3000 data scaling
HKL-3000 phasing