X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 7.5
Temperature 293.0
Details 0.8M SODIUM CITRATE, 0.1M HEPES

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 93.28 α = 90
b = 60.81 β = 103.74
c = 118.94 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315 -- 2013-07-09
Diffraction Radiation
Monochromator Protocol
FIXED EXIT SI 111 DOUBLE CRYSTAL SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SPRING-8 BEAMLINE BL38B1 1.0000 SPring-8 BL38B1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.2 50 99.8 0.045 -- -- 5.3 -- 33190 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.2 2.28 98.5 0.282 -- 3.9 3.5 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.2 38.511 -- 1.34 -- 33090 1676 99.67 -- 0.2376 0.2366 0.2557 Random
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.198 2.2627 -- 134 2526 0.3123 0.3419 -- 97.0
X Ray Diffraction 2.2627 2.3357 -- 128 2652 0.2952 0.341 -- 100.0
X Ray Diffraction 2.3357 2.4192 -- 133 2611 0.2979 0.2714 -- 100.0
X Ray Diffraction 2.4192 2.516 -- 146 2598 0.2828 0.3033 -- 100.0
X Ray Diffraction 2.516 2.6305 -- 140 2600 0.2903 0.3003 -- 100.0
X Ray Diffraction 2.6305 2.7691 -- 129 2627 0.284 0.268 -- 100.0
X Ray Diffraction 2.7691 2.9426 -- 125 2629 0.2906 0.3653 -- 100.0
X Ray Diffraction 2.9426 3.1697 -- 142 2581 0.2946 0.2877 -- 100.0
X Ray Diffraction 3.1697 3.4885 -- 139 2641 0.2643 0.316 -- 100.0
X Ray Diffraction 3.4885 3.9928 -- 157 2615 0.2284 0.241 -- 100.0
X Ray Diffraction 3.9928 5.0287 -- 164 2630 0.1985 0.2196 -- 100.0
X Ray Diffraction 5.0287 38.5172 -- 139 2704 0.1893 0.2096 -- 100.0
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.003
f_angle_d 0.534
f_dihedral_angle_d 13.189
f_chiral_restr 0.018
f_bond_d 0.002
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 4130
Nucleic Acid Atoms 0
Heterogen Atoms 39
Solvent Atoms 30

Software

Software
Software Name Purpose
PHENIX refinement version: (phenix.refine: 1.9_1692)
HKL-2000 data reduction
SCALEPACK data scaling
PHENIX phasing