X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 7.5
Temperature 293.0
Details 9.0% PEG 4000, 4.5% isopropanol, 0.1M HEPES, pH 7.5

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 66.33 α = 90
b = 213.09 β = 90.17
c = 68.18 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD MARMOSAIC 300 mm CCD -- 2013-02-04
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 22-ID 1.0000 APS 22-ID

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.8 50 99.0 0.063 -- 17.595 3.5 -- 175625 -- -- 30.25
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.8 1.83 98.9 0.721 -- 2.0 3.2 8706

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.8 35.855 -- 1.34 -- 171238 8573 98.36 -- 0.1755 0.1739 0.2074 Random selection
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.8 1.8205 -- 282 5326 0.2677 0.3263 -- 98.0
X Ray Diffraction 1.8205 1.8419 -- 290 5458 0.2535 0.2744 -- 98.0
X Ray Diffraction 1.8419 1.8643 -- 301 5261 0.2526 0.2776 -- 97.0
X Ray Diffraction 1.8643 1.8879 -- 278 5429 0.2682 0.3284 -- 98.0
X Ray Diffraction 1.8879 1.9128 -- 282 5134 0.3498 0.3827 -- 94.0
X Ray Diffraction 1.9128 1.939 -- 250 5276 0.3163 0.3488 -- 95.0
X Ray Diffraction 1.939 1.9667 -- 281 5381 0.2278 0.2426 -- 98.0
X Ray Diffraction 1.9667 1.996 -- 292 5434 0.2149 0.2672 -- 98.0
X Ray Diffraction 1.996 2.0272 -- 281 5420 0.2131 0.2457 -- 98.0
X Ray Diffraction 2.0272 2.0604 -- 326 5364 0.2171 0.2494 -- 98.0
X Ray Diffraction 2.0604 2.096 -- 273 5360 0.2151 0.2395 -- 99.0
X Ray Diffraction 2.096 2.1341 -- 285 5557 0.1956 0.2333 -- 99.0
X Ray Diffraction 2.1341 2.1751 -- 260 5411 0.1947 0.2345 -- 99.0
X Ray Diffraction 2.1751 2.2195 -- 312 5446 0.2067 0.2515 -- 98.0
X Ray Diffraction 2.2195 2.2678 -- 264 5294 0.252 0.2761 -- 95.0
X Ray Diffraction 2.2678 2.3205 -- 280 5366 0.2026 0.2298 -- 98.0
X Ray Diffraction 2.3205 2.3785 -- 300 5474 0.1845 0.2186 -- 99.0
X Ray Diffraction 2.3785 2.4428 -- 295 5472 0.1947 0.2258 -- 99.0
X Ray Diffraction 2.4428 2.5147 -- 267 5417 0.1901 0.2361 -- 99.0
X Ray Diffraction 2.5147 2.5958 -- 297 5417 0.194 0.2393 -- 99.0
X Ray Diffraction 2.5958 2.6886 -- 305 5415 0.1912 0.2353 -- 99.0
X Ray Diffraction 2.6886 2.7962 -- 307 5474 0.1895 0.2423 -- 99.0
X Ray Diffraction 2.7962 2.9234 -- 293 5450 0.1804 0.223 -- 99.0
X Ray Diffraction 2.9234 3.0774 -- 303 5503 0.1753 0.2168 -- 100.0
X Ray Diffraction 3.0774 3.2701 -- 304 5491 0.1664 0.197 -- 100.0
X Ray Diffraction 3.2701 3.5224 -- 273 5561 0.1536 0.1893 -- 100.0
X Ray Diffraction 3.5224 3.8765 -- 272 5498 0.1467 0.1789 -- 100.0
X Ray Diffraction 3.8765 4.4366 -- 285 5550 0.129 0.1383 -- 100.0
X Ray Diffraction 4.4366 5.5862 -- 280 5558 0.128 0.1648 -- 100.0
X Ray Diffraction 5.5862 35.8619 -- 255 5468 0.1559 0.1781 -- 97.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 45.0128
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.005
f_bond_d 0.007
f_dihedral_angle_d 12.277
f_angle_d 1.065
f_chiral_restr 0.044
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 12050
Nucleic Acid Atoms 0
Heterogen Atoms 353
Solvent Atoms 1402

Software

Software
Software Name Purpose
PHENIX refinement version: dev_1702
HKL-2000 data reduction
SCALEPACK data scaling
PHASER phasing
PDB_EXTRACT data extraction version: 3.15