X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 8
Temperature 293.0
Details peg

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 58.31 α = 90
b = 58.31 β = 90
c = 115.13 γ = 120
Symmetry
Space Group P 32 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 270 -- 2012-11-18
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NE3A 1 Photon Factory AR-NE3A

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.4 50 99.0 -- -- -- 15.4 9388 9288 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.4 2.44 -- 0.57 -- 2.0 5.2 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.4 50.0 -- -- -- 8807 447 98.95 -- 0.19366 0.19202 0.22654 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.399 2.461 -- 32 517 0.309 0.342 -- 90.3
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 53.02
Anisotropic B[1][1] 2.24
Anisotropic B[1][2] 1.12
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] 2.24
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -3.36
RMS Deviations
Key Refinement Restraint Deviation
r_chiral_restr 0.086
r_bond_refined_d 0.007
r_dihedral_angle_4_deg 16.149
r_gen_planes_refined 0.003
r_dihedral_angle_2_deg 36.353
r_angle_refined_deg 1.173
r_dihedral_angle_1_deg 5.743
r_dihedral_angle_3_deg 18.358
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 1533
Nucleic Acid Atoms 0
Heterogen Atoms 11
Solvent Atoms 84

Software

Software
Software Name Purpose
REFMAC refinement version: 5.6.0117
HKL-2000 data reduction
HKL-3000 data scaling
BALBES phasing