X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
Temperature 293.0
Details 0.1M tri-sodium citrate pH=5.6, 24% PEG 4000, 0.15M ammonium acetate. 1:1 drop ratio with microseeding.; Soak solution at pH 8.0

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 57.6 α = 90
b = 57.6 β = 90
c = 122.4 γ = 90
Symmetry
Space Group P 43 21 2

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315r -- 2014-02-13
Diffraction Radiation
Monochromator Protocol
Si(220) Asymmetric cut single crystal SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ALS BEAMLINE 5.0.1 0.977 ALS 5.0.1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.3 34 84.2 -- -- -- 26.7 43282 43245 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.3 1.32 36.2 -- -- 1.2 17.9 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
FOURIER SYNTHESIS 1.3 33.907 -- 1.34 -- 43245 4205 83.9 -- 0.1595 0.1566 0.1857 same 5% as 4ieu
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.3 1.3148 -- 46 513 0.2999 0.2836 -- 33.0
X Ray Diffraction 1.3148 1.3302 -- 51 579 0.3007 0.3218 -- 38.0
X Ray Diffraction 1.3302 1.3464 -- 66 654 0.283 0.2925 -- 43.0
X Ray Diffraction 1.3464 1.3635 -- 82 681 0.2615 0.2953 -- 45.0
X Ray Diffraction 1.3635 1.3814 -- 68 767 0.2556 0.2367 -- 50.0
X Ray Diffraction 1.3814 1.4004 -- 86 858 0.245 0.3174 -- 56.0
X Ray Diffraction 1.4004 1.4204 -- 80 939 0.2418 0.2593 -- 61.0
X Ray Diffraction 1.4204 1.4416 -- 116 1022 0.2339 0.2525 -- 66.0
X Ray Diffraction 1.4416 1.4641 -- 118 1104 0.2272 0.2166 -- 74.0
X Ray Diffraction 1.4641 1.4881 -- 139 1274 0.1957 0.2292 -- 83.0
X Ray Diffraction 1.4881 1.5138 -- 176 1481 0.1865 0.2182 -- 96.0
X Ray Diffraction 1.5138 1.5413 -- 151 1457 0.174 0.2006 -- 97.0
X Ray Diffraction 1.5413 1.5709 -- 183 1482 0.181 0.2113 -- 97.0
X Ray Diffraction 1.5709 1.603 -- 178 1462 0.1588 0.1854 -- 97.0
X Ray Diffraction 1.603 1.6378 -- 144 1510 0.159 0.1564 -- 97.0
X Ray Diffraction 1.6378 1.6759 -- 171 1478 0.1545 0.1892 -- 97.0
X Ray Diffraction 1.6759 1.7179 -- 172 1492 0.1616 0.2035 -- 98.0
X Ray Diffraction 1.7179 1.7643 -- 158 1506 0.17 0.1667 -- 98.0
X Ray Diffraction 1.7643 1.8162 -- 154 1524 0.1626 0.1766 -- 98.0
X Ray Diffraction 1.8162 1.8748 -- 156 1523 0.1502 0.2003 -- 98.0
X Ray Diffraction 1.8748 1.9418 -- 149 1536 0.1528 0.1867 -- 98.0
X Ray Diffraction 1.9418 2.0196 -- 179 1513 0.1463 0.1775 -- 99.0
X Ray Diffraction 2.0196 2.1115 -- 178 1516 0.1475 0.1764 -- 98.0
X Ray Diffraction 2.1115 2.2228 -- 153 1565 0.1438 0.168 -- 99.0
X Ray Diffraction 2.2228 2.362 -- 165 1529 0.1428 0.1772 -- 99.0
X Ray Diffraction 2.362 2.5443 -- 161 1584 0.1569 0.1705 -- 99.0
X Ray Diffraction 2.5443 2.8003 -- 183 1552 0.1508 0.2081 -- 99.0
X Ray Diffraction 2.8003 3.2052 -- 181 1586 0.1599 0.1807 -- 99.0
X Ray Diffraction 3.2052 4.0371 -- 174 1609 0.1407 0.1911 -- 99.0
X Ray Diffraction 4.0371 33.9184 -- 187 1744 0.1412 0.1575 -- 100.0
RMS Deviations
Key Refinement Restraint Deviation
f_chiral_restr 0.08
f_bond_d 0.01
f_dihedral_angle_d 13.88
f_plane_restr 0.006
f_angle_d 1.265
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 1505
Nucleic Acid Atoms 0
Heterogen Atoms 9
Solvent Atoms 302

Software

Software
Software Name Purpose
PHENIX refinement version: (phenix.refine: 1.9_1692)
iMOSFLM data reduction
Aimless data scaling
PHENIX phasing