X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
Temperature 291.0
Details See publication for details. Precipitant was 10 % PEG 8000, 0.01 M zinc acetate, 0.1 M Tris-HCl pH 8.0.

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 100.61 α = 90
b = 76.72 β = 94.09
c = 199.12 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS 2M -- 2014-01-07
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON DIAMOND BEAMLINE I04-1 0.9200 Diamond I04-1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
3.3 49.7 97.4 -- -- -- 3.7 -- 44836 -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
-- 3.301 49.653 -- 1.97 -- 40011 1990 86.78 -- 0.2311 0.2283 0.2843 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 3.3007 3.3832 -- 56 941 0.3085 0.4103 -- 30.0
X Ray Diffraction 3.3832 3.4746 -- 97 1715 0.3134 0.3564 -- 55.0
X Ray Diffraction 3.4746 3.5769 -- 147 2271 0.3002 0.3547 -- 75.0
X Ray Diffraction 3.5769 3.6923 -- 156 2828 0.2819 0.3405 -- 91.0
X Ray Diffraction 3.6923 3.8242 -- 182 3048 0.2706 0.3026 -- 98.0
X Ray Diffraction 3.8242 3.9772 -- 133 3050 0.2583 0.3231 -- 98.0
X Ray Diffraction 3.9772 4.1582 -- 143 3053 0.2515 0.3211 -- 98.0
X Ray Diffraction 4.1582 4.3773 -- 147 3064 0.2238 0.2814 -- 97.0
X Ray Diffraction 4.3773 4.6513 -- 147 2797 0.1957 0.2491 -- 90.0
X Ray Diffraction 4.6513 5.0102 -- 150 2994 0.1882 0.2246 -- 96.0
X Ray Diffraction 5.0102 5.5138 -- 140 3141 0.2027 0.271 -- 99.0
X Ray Diffraction 5.5138 6.3102 -- 172 3083 0.217 0.3032 -- 99.0
X Ray Diffraction 6.3102 7.945 -- 170 3062 0.2096 0.2399 -- 97.0
X Ray Diffraction 7.945 49.6588 -- 150 2974 0.1754 0.2172 -- 91.0
RMS Deviations
Key Refinement Restraint Deviation
f_angle_d 0.813
f_chiral_restr 0.033
f_dihedral_angle_d 13.056
f_bond_d 0.004
f_plane_restr 0.004
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 18785
Nucleic Acid Atoms 0
Heterogen Atoms 12
Solvent Atoms 0

Software

Software
Software Name Purpose
PHENIX refinement version: (phenix.refine: 1.9_1692)