X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 7
Temperature 291.0
Details 0.1 M MES, 1 M sodium citrate

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 143.18 α = 90
b = 143.18 β = 90
c = 143.18 γ = 90
Symmetry
Space Group I 2 3

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315r -- 2014-09-16
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 0.9537 Australian Synchrotron MX2

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.85 19.86 99.9 -- -- -- 38.5 -- 41627 0.0 0.0 --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.85 1.89 100.0 -- -- 1.3 36.2 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.9 19.86 -- -- -- 36586 1835 99.79 -- 0.19809 0.1974 0.21179 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.9 1.949 -- 109 2722 0.392 0.408 -- 99.79
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 30.578
Anisotropic B[1][1] 0.0
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] 0.0
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 0.0
RMS Deviations
Key Refinement Restraint Deviation
r_gen_planes_other 0.001
r_mcbond_other 1.465
r_mcangle_it 2.295
r_dihedral_angle_4_deg 16.752
r_chiral_restr 0.095
r_scbond_other 2.154
r_mcbond_it 1.47
r_long_range_B_refined 5.473
r_bond_refined_d 0.012
r_mcangle_other 2.294
r_bond_other_d 0.001
r_scangle_other 3.47
r_long_range_B_other 5.474
r_dihedral_angle_1_deg 5.739
r_gen_planes_refined 0.007
r_dihedral_angle_3_deg 13.268
r_scbond_it 2.156
r_angle_other_deg 0.835
r_dihedral_angle_2_deg 37.879
r_angle_refined_deg 1.506
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 2297
Nucleic Acid Atoms 0
Heterogen Atoms 13
Solvent Atoms 111

Software

Software
Software Name Purpose
REFMAC refinement version: 5.8.0049