X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
pH 6
Temperature 293.0
Details 0.05 M zinc acetate, 6% v/v ethylene glycol, 0.1 M sodium cacodylate, pH 6.0, 6.6 % w/v PEG 8000

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 114.08 α = 90
b = 160.03 β = 90
c = 161.88 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315r -- 2014-06-25
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 24-ID-E 0.9792 APS 24-ID-E

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.3 40 99.9 -- -- -- 12.4 -- 131752 -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
SAD 2.3 38.961 -- 0.93 -- 254129 12418 99.91 -- 0.1971 0.1962 0.2145 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.3 2.3261 -- 357 8176 0.3089 0.3312 -- 100.0
X Ray Diffraction 2.3261 2.3535 -- 410 8037 0.3029 0.286 -- 100.0
X Ray Diffraction 2.3535 2.3822 -- 406 8137 0.2883 0.3031 -- 100.0
X Ray Diffraction 2.3822 2.4123 -- 401 7998 0.2933 0.319 -- 100.0
X Ray Diffraction 2.4123 2.4441 -- 450 8075 0.2847 0.3231 -- 100.0
X Ray Diffraction 2.4441 2.4776 -- 476 7972 0.2701 0.2909 -- 100.0
X Ray Diffraction 2.4776 2.5129 -- 425 7997 0.2565 0.2955 -- 100.0
X Ray Diffraction 2.5129 2.5505 -- 425 8044 0.2462 0.2881 -- 100.0
X Ray Diffraction 2.5505 2.5903 -- 461 8093 0.2405 0.2588 -- 100.0
X Ray Diffraction 2.5903 2.6328 -- 361 8104 0.2363 0.2498 -- 100.0
X Ray Diffraction 2.6328 2.6781 -- 414 8058 0.2297 0.2342 -- 100.0
X Ray Diffraction 2.6781 2.7268 -- 314 8133 0.2198 0.2316 -- 100.0
X Ray Diffraction 2.7268 2.7793 -- 449 8054 0.2088 0.2235 -- 100.0
X Ray Diffraction 2.7793 2.836 -- 389 8082 0.2094 0.2443 -- 100.0
X Ray Diffraction 2.836 2.8976 -- 397 8071 0.2006 0.2246 -- 100.0
X Ray Diffraction 2.8976 2.965 -- 410 8116 0.1991 0.2017 -- 100.0
X Ray Diffraction 2.965 3.0391 -- 443 8003 0.1904 0.2196 -- 100.0
X Ray Diffraction 3.0391 3.1213 -- 401 8075 0.1868 0.1957 -- 100.0
X Ray Diffraction 3.1213 3.2131 -- 394 8073 0.1997 0.2332 -- 100.0
X Ray Diffraction 3.2131 3.3167 -- 415 8064 0.1976 0.2169 -- 100.0
X Ray Diffraction 3.3167 3.4352 -- 441 8040 0.1886 0.2105 -- 100.0
X Ray Diffraction 3.4352 3.5726 -- 454 8062 0.1782 0.1979 -- 100.0
X Ray Diffraction 3.5726 3.7351 -- 441 8010 0.172 0.1961 -- 100.0
X Ray Diffraction 3.7351 3.9319 -- 404 8095 0.1651 0.1777 -- 100.0
X Ray Diffraction 3.9319 4.1779 -- 401 8051 0.1689 0.2051 -- 100.0
X Ray Diffraction 4.1779 4.5001 -- 391 8055 0.1606 0.1634 -- 100.0
X Ray Diffraction 4.5001 4.9522 -- 396 8127 0.1694 0.1968 -- 100.0
X Ray Diffraction 4.9522 5.6669 -- 416 8051 0.1925 0.2103 -- 100.0
X Ray Diffraction 5.6669 7.1325 -- 489 7983 0.2211 0.2609 -- 100.0
X Ray Diffraction 7.1325 38.9667 -- 387 7875 0.184 0.1686 -- 97.0
RMS Deviations
Key Refinement Restraint Deviation
f_dihedral_angle_d 11.076
f_bond_d 0.008
f_angle_d 0.955
f_plane_restr 0.005
f_chiral_restr 0.06
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers

Software

Software
Software Name Purpose
PHENIX refinement version: (phenix.refine: 1.8.1_1168)