X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
pH 6.2
Temperature 289.0
Details BrsuA.01104.a.B1.PS01850 at 25.1 mg/mL against JCSG+ screen condition D3, 0.2 M NaCl, 0.1 M NaK Phosphate pH 6.2, 50% PEG 200, crystal tracking ID 246776d3, unique puck ID thi5-2

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 89.85 α = 111.49
b = 121.91 β = 106.53
c = 133.72 γ = 89.81
Symmetry
Space Group P 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD MARMOSAIC 300 mm CCD -- 2013-08-08
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 21-ID-F 0.97872 APS 21-ID-F

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.45 50 96.3 0.07 -- -- 2.3 -- 178399 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.45 2.5 95.8 0.513 -- 2.04 2.3 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
-- 2.45 50.0 -- -- -- 169402 8955 96.46 -- 0.23807 0.23733 0.25215 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.45 2.513 -- 657 12432 0.323 0.327 -- 95.57
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 61.904
Anisotropic B[1][1] -3.43
Anisotropic B[1][2] -0.46
Anisotropic B[1][3] 0.8
Anisotropic B[2][2] -4.69
Anisotropic B[2][3] 0.95
Anisotropic B[3][3] 4.41
RMS Deviations
Key Refinement Restraint Deviation
r_scangle_other 0.0
r_gen_planes_other 0.006
r_dihedral_angle_4_deg 17.68
r_dihedral_angle_2_deg 36.408
r_angle_other_deg 1.205
r_gen_planes_refined 0.008
r_mcangle_other 0.0
r_long_range_B_refined 4.626
r_bond_other_d 0.006
r_long_range_B_other 4.622
r_mcangle_it 0.0
r_chiral_restr 0.075
r_dihedral_angle_3_deg 15.868
r_angle_refined_deg 1.328
r_dihedral_angle_1_deg 6.051
r_mcbond_it 0.0
r_scbond_it 0.0
r_mcbond_other 0.0
r_scbond_other 0.0
r_bond_refined_d 0.01
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 29981
Nucleic Acid Atoms 0
Heterogen Atoms 7
Solvent Atoms 354

Software

Software
Software Name Purpose
REFMAC refinement version: 5.8.0073