X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
Temperature 277.0
Details 2.0 M Ammonium Sulfate and 0.1 M Hepes

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 87 α = 90
b = 87 β = 90
c = 128.81 γ = 120
Symmetry
Space Group P 6

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS 6M -- 2011-11-24
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 0.980110 SOLEIL PROXIMA 1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.55 48.96 99.8 -- 0.026 -- 10.8 -- 79939 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.55 1.6 98.06 -- -- 1.8 8.3 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.55 48.956 -- 1.35 -- 79916 4033 99.77 -- 0.1695 0.1681 0.1977 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.549 1.5672 -- 129 2465 0.2991 0.3099 -- 94.0
X Ray Diffraction 1.5672 1.5863 -- 125 2663 0.2419 0.282 -- 100.0
X Ray Diffraction 1.5863 1.6064 -- 155 2559 0.2199 0.2492 -- 100.0
X Ray Diffraction 1.6064 1.6275 -- 124 2614 0.2198 0.2591 -- 100.0
X Ray Diffraction 1.6275 1.6498 -- 133 2641 0.2053 0.2513 -- 100.0
X Ray Diffraction 1.6498 1.6734 -- 136 2620 0.2041 0.233 -- 100.0
X Ray Diffraction 1.6734 1.6984 -- 145 2596 0.2001 0.2454 -- 100.0
X Ray Diffraction 1.6984 1.7249 -- 139 2615 0.1972 0.2665 -- 100.0
X Ray Diffraction 1.7249 1.7532 -- 147 2616 0.1967 0.2408 -- 100.0
X Ray Diffraction 1.7532 1.7834 -- 152 2604 0.1823 0.2293 -- 100.0
X Ray Diffraction 1.7834 1.8158 -- 128 2634 0.1827 0.244 -- 100.0
X Ray Diffraction 1.8158 1.8508 -- 146 2628 0.1816 0.2182 -- 100.0
X Ray Diffraction 1.8508 1.8885 -- 149 2597 0.174 0.2211 -- 100.0
X Ray Diffraction 1.8885 1.9296 -- 137 2587 0.1683 0.1946 -- 100.0
X Ray Diffraction 1.9296 1.9745 -- 143 2638 0.1688 0.2002 -- 100.0
X Ray Diffraction 1.9745 2.0239 -- 146 2617 0.1605 0.2172 -- 100.0
X Ray Diffraction 2.0239 2.0786 -- 128 2617 0.1647 0.2129 -- 100.0
X Ray Diffraction 2.0786 2.1398 -- 142 2602 0.1625 0.2149 -- 100.0
X Ray Diffraction 2.1398 2.2088 -- 122 2637 0.1628 0.1885 -- 100.0
X Ray Diffraction 2.2088 2.2878 -- 133 2653 0.1661 0.2036 -- 100.0
X Ray Diffraction 2.2878 2.3794 -- 131 2586 0.1639 0.2282 -- 100.0
X Ray Diffraction 2.3794 2.4877 -- 156 2642 0.1688 0.1938 -- 100.0
X Ray Diffraction 2.4877 2.6188 -- 142 2604 0.1724 0.1979 -- 100.0
X Ray Diffraction 2.6188 2.7829 -- 135 2630 0.1715 0.1748 -- 100.0
X Ray Diffraction 2.7829 2.9977 -- 140 2636 0.1682 0.2048 -- 100.0
X Ray Diffraction 2.9977 3.2993 -- 146 2622 0.162 0.1717 -- 100.0
X Ray Diffraction 3.2993 3.7766 -- 147 2641 0.1465 0.1656 -- 100.0
X Ray Diffraction 3.7766 4.7575 -- 136 2627 0.1419 0.1628 -- 100.0
X Ray Diffraction 4.7575 48.9808 -- 141 2692 0.1806 0.2097 -- 100.0
RMS Deviations
Key Refinement Restraint Deviation
f_bond_d 0.006
f_plane_restr 0.005
f_chiral_restr 0.076
f_angle_d 1.088
f_dihedral_angle_d 14.847
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 3928
Nucleic Acid Atoms 0
Heterogen Atoms 20
Solvent Atoms 513

Software

Software
Software Name Purpose
PHENIX refinement version: (phenix.refine: 1.8_1069)
XDS data reduction
Aimless data scaling