X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion
Temperature 293.0
Details PEG, Tris, Isopropanol, Phenol, Magnesium

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 63.12 α = 90
b = 108.87 β = 106.93
c = 68.07 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS 6M -- 2013-12-11
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SSRL BEAMLINE BL11-1 0.97945 SSRL BL11-1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.9 38.98 98.8 0.07 -- -- 3.5 -- 19381 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.9 3.08 98.8 -- -- 2.6 3.6 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.9 38.98 -- -- -- 19358 970 98.73 -- 0.2192 0.2173 0.2533 copy from 4OLA
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.9 3.052 -- 128 2618 0.307 0.3733 -- 99.0
X Ray Diffraction 3.052 3.2431 -- 154 2600 0.2736 0.3278 -- 99.0
X Ray Diffraction 3.2431 3.4933 -- 124 2612 0.2603 0.3089 -- 97.0
X Ray Diffraction 3.4933 3.8446 -- 123 2631 0.2214 0.2729 -- 100.0
X Ray Diffraction 3.8446 4.4003 -- 148 2623 0.1971 0.2149 -- 99.0
X Ray Diffraction 4.4003 5.5414 -- 142 2645 0.1853 0.2116 -- 99.0
X Ray Diffraction 5.5414 38.9797 -- 151 2659 0.1974 0.237 -- 99.0
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.005
f_angle_d 1.035
f_dihedral_angle_d 14.366
f_bond_d 0.01
f_chiral_restr 0.067
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers

Software

Software
Software Name Purpose
PHENIX refinement version: (phenix.refine: 1.8.4_1496)
XDS data scaling
PHASER phasing