X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 73.37 α = 90
b = 109.18 β = 90
c = 159.03 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS -- --
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON DIAMOND BEAMLINE I04 -- Diamond I04

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.6 50 99.7 0.08 -- -- 3.7 -- 39907 -- 0.0 52.0
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.6 2.74 99.9 0.4 -- 3.5 3.7 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
SAD 2.6 48.347 -- 1.0 -- 37521 3748 98.85 -- 0.1901 0.1871 0.245 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.6 2.6329 -- 126 2701 0.2732 0.3379 -- 99.0
X Ray Diffraction 2.6329 2.6676 -- 120 2624 0.2565 0.3171 -- 99.0
X Ray Diffraction 2.6676 2.7041 -- 140 2668 0.2464 0.2929 -- 99.0
X Ray Diffraction 2.7041 2.7428 -- 152 2652 0.2418 0.3323 -- 99.0
X Ray Diffraction 2.7428 2.7837 -- 139 2642 0.2525 0.3297 -- 99.0
X Ray Diffraction 2.7837 2.8272 -- 134 2638 0.2347 0.2968 -- 99.0
X Ray Diffraction 2.8272 2.8735 -- 137 2652 0.2332 0.2866 -- 99.0
X Ray Diffraction 2.8735 2.9231 -- 176 2643 0.2242 0.3358 -- 99.0
X Ray Diffraction 2.9231 2.9762 -- 155 2576 0.2071 0.2423 -- 99.0
X Ray Diffraction 2.9762 3.0335 -- 112 2683 0.1977 0.2725 -- 99.0
X Ray Diffraction 3.0335 3.0954 -- 111 2666 0.21 0.3262 -- 99.0
X Ray Diffraction 3.0954 3.1627 -- 141 2634 0.2064 0.2611 -- 99.0
X Ray Diffraction 3.1627 3.2362 -- 137 2642 0.1838 0.2445 -- 99.0
X Ray Diffraction 3.2362 3.3171 -- 168 2659 0.1852 0.2462 -- 99.0
X Ray Diffraction 3.3171 3.4068 -- 133 2625 0.1955 0.2993 -- 99.0
X Ray Diffraction 3.4068 3.507 -- 129 2665 0.2068 0.2749 -- 99.0
X Ray Diffraction 3.507 3.6202 -- 148 2637 0.1842 0.2734 -- 99.0
X Ray Diffraction 3.6202 3.7495 -- 141 2632 0.183 0.2828 -- 99.0
X Ray Diffraction 3.7495 3.8996 -- 124 2671 0.1814 0.2131 -- 99.0
X Ray Diffraction 3.8996 4.077 -- 130 2644 0.1605 0.2285 -- 99.0
X Ray Diffraction 4.077 4.2918 -- 154 2605 0.1378 0.2076 -- 99.0
X Ray Diffraction 4.2918 4.5605 -- 145 2630 0.1345 0.1833 -- 99.0
X Ray Diffraction 4.5605 4.9123 -- 161 2630 0.1352 0.1838 -- 99.0
X Ray Diffraction 4.9123 5.4061 -- 121 2634 0.1716 0.2086 -- 99.0
X Ray Diffraction 5.4061 6.187 -- 131 2633 0.2174 0.2697 -- 98.0
X Ray Diffraction 6.187 7.7896 -- 148 2604 0.2078 0.2103 -- 98.0
X Ray Diffraction 7.7896 48.3556 -- 135 2604 0.1673 0.1949 -- 97.0
Temperature Factor Modeling
Temperature Factor Value
Anisotropic B[1][1] -0.0655
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] 2.729
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -2.6635
RMS Deviations
Key Refinement Restraint Deviation
f_chiral_restr 0.078
f_dihedral_angle_d 18.243
f_angle_d 1.549
f_plane_restr 0.006
f_bond_d 0.015
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 7101
Nucleic Acid Atoms 0
Heterogen Atoms 0
Solvent Atoms 209

Software

Software
Software Name Purpose
PHENIX refinement version: (PHENIX.REFINE)
XDS data reduction
SCALA data scaling
PHASER phasing