X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion
Temperature 293.0
Details Reservoir: 30 %(w/v) PEG4000, 0.2 M ammonium acetate, 0.1 M trisodium citrate

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 126 α = 90
b = 126 β = 90
c = 124.14 γ = 90
Symmetry
Space Group P 43 21 2

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL PSI PILATUS 6M -- 2012-10-20
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SLS BEAMLINE X06DA 1.0000 SLS X06DA

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.99 44.55 98.5 -- 0.172 -- 6.5 -- 20425 -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.995 44.548 -- 1.35 -- 20353 1018 98.39 -- 0.1897 0.1872 0.2386 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.9953 3.1532 -- 130 2460 0.2743 0.2998 -- 90.0
X Ray Diffraction 3.1532 3.3507 -- 145 2758 0.2263 0.2751 -- 100.0
X Ray Diffraction 3.3507 3.6093 -- 146 2758 0.2028 0.2892 -- 100.0
X Ray Diffraction 3.6093 3.9723 -- 145 2764 0.1734 0.2271 -- 100.0
X Ray Diffraction 3.9723 4.5467 -- 147 2791 0.1563 0.2288 -- 100.0
X Ray Diffraction 4.5467 5.7264 -- 150 2834 0.1639 0.2095 -- 100.0
X Ray Diffraction 5.7264 44.5526 -- 155 2970 0.1951 0.2246 -- 100.0
RMS Deviations
Key Refinement Restraint Deviation
f_dihedral_angle_d 10.416
f_bond_d 0.002
f_plane_restr 0.003
f_chiral_restr 0.023
f_angle_d 0.552
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 5624
Nucleic Acid Atoms 0
Heterogen Atoms 46
Solvent Atoms 45

Software

Software
Software Name Purpose
PHENIX refinement version: (phenix.refine: 1.9_1692)