X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 7.5
Temperature 277.0
Details PEG 20K, KSCN, Mg Acetate, Tris-Acetate, Glycerol, Spermidine

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 437 α = 90
b = 286.75 β = 99.24
c = 305.18 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS 6M -- 2013-07-01
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 1.0 SOLEIL PROXIMA 1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
3.6 135.58 100.0 0.517 -- -- 13.52 -- 855160 -- -3.0 115.57
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
3.6 3.7 100.0 3.303 -- 0.96 -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 3.6 135.579 -- 0.0 -- 854944 17100 99.97 -- 0.1913 0.1898 0.2667 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 3.6 3.6409 -- 570 27900 0.274 0.36 -- 100.0
X Ray Diffraction 3.6409 3.6837 -- 567 27834 0.2689 0.3442 -- 100.0
X Ray Diffraction 3.6837 3.7287 -- 568 27824 0.2486 0.3161 -- 100.0
X Ray Diffraction 3.7287 3.7759 -- 570 27904 0.2376 0.3088 -- 100.0
X Ray Diffraction 3.7759 3.8256 -- 567 27760 0.2207 0.2924 -- 100.0
X Ray Diffraction 3.8256 3.878 -- 571 27974 0.2233 0.3118 -- 100.0
X Ray Diffraction 3.878 3.9334 -- 566 27788 0.2104 0.2946 -- 100.0
X Ray Diffraction 3.9334 3.9921 -- 570 27891 0.2044 0.291 -- 100.0
X Ray Diffraction 3.9921 4.0545 -- 568 27854 0.2045 0.3017 -- 100.0
X Ray Diffraction 4.0545 4.1209 -- 569 27902 0.1866 0.2777 -- 100.0
X Ray Diffraction 4.1209 4.192 -- 568 27813 0.1829 0.2828 -- 100.0
X Ray Diffraction 4.192 4.2682 -- 570 27944 0.1802 0.2682 -- 100.0
X Ray Diffraction 4.2682 4.3503 -- 570 27901 0.1746 0.2665 -- 100.0
X Ray Diffraction 4.3503 4.4391 -- 566 27785 0.1721 0.2579 -- 100.0
X Ray Diffraction 4.4391 4.5357 -- 571 27927 0.172 0.2672 -- 100.0
X Ray Diffraction 4.5357 4.6412 -- 569 27904 0.1712 0.2631 -- 100.0
X Ray Diffraction 4.6412 4.7573 -- 570 27910 0.1633 0.2464 -- 100.0
X Ray Diffraction 4.7573 4.8859 -- 569 27915 0.1591 0.2424 -- 100.0
X Ray Diffraction 4.8859 5.0297 -- 571 27936 0.1667 0.2517 -- 100.0
X Ray Diffraction 5.0297 5.192 -- 570 27920 0.1653 0.2669 -- 100.0
X Ray Diffraction 5.192 5.3776 -- 569 27910 0.1642 0.2442 -- 100.0
X Ray Diffraction 5.3776 5.5929 -- 570 27928 0.1614 0.2424 -- 100.0
X Ray Diffraction 5.5929 5.8475 -- 571 27981 0.1613 0.2391 -- 100.0
X Ray Diffraction 5.8475 6.1557 -- 571 27956 0.1621 0.2401 -- 100.0
X Ray Diffraction 6.1557 6.5414 -- 571 27978 0.1754 0.2606 -- 100.0
X Ray Diffraction 6.5414 7.0465 -- 570 27979 0.1795 0.269 -- 100.0
X Ray Diffraction 7.0465 7.7555 -- 573 28055 0.1868 0.2697 -- 100.0
X Ray Diffraction 7.7555 8.8776 -- 573 28068 0.1867 0.2442 -- 100.0
X Ray Diffraction 8.8776 11.184 -- 574 28114 0.199 0.2571 -- 100.0
X Ray Diffraction 11.184 135.675 -- 578 28289 0.2417 0.2721 -- 99.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 98.7847
RMS Deviations
Key Refinement Restraint Deviation
f_bond_d 0.018
f_dihedral_angle_d 20.751
f_angle_d 2.256
f_plane_restr 0.01
f_chiral_restr 0.084
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 179691
Nucleic Acid Atoms 222027
Heterogen Atoms 10957
Solvent Atoms 0

Software

Software
Software Name Purpose
XDS data reduction
PDB_EXTRACT data extraction version: 3.14
PHENIX refinement version: (phenix.refine: dev_1702)
XSCALE data scaling
XSCALE data reduction