X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
Temperature 295.0
Details 10% MPD, 50mM Na Citrate pH 6.5, 100 mM Hepes pH 7.2

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 97.78 α = 90
b = 97.78 β = 90
c = 141.12 γ = 120
Symmetry
Space Group P 62 2 2

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 210 -- 2006-02-22
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ALS BEAMLINE 8.3.1 1.1159 ALS 8.3.1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.86 42.34 97.9 0.129 -- -- 4.1 -- 33284 -- 0.0 --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.86 1.98 96.4 0.42 -- 2.3 3.3 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
-- 1.86 42.34 -- 1.34 -- 33284 1910 99.91 -- 0.1413 0.1396 0.1684 random
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.86 1.8845 -- 144 2313 0.2265 0.2341 -- 100.0
X Ray Diffraction 1.8845 1.9103 -- 139 2277 0.1989 0.2166 -- 100.0
X Ray Diffraction 1.9103 1.9376 -- 148 2282 0.1809 0.2323 -- 100.0
X Ray Diffraction 1.9376 1.9665 -- 148 2292 0.1694 0.185 -- 100.0
X Ray Diffraction 1.9665 1.9972 -- 144 2326 0.1617 0.174 -- 100.0
X Ray Diffraction 1.9972 2.03 -- 137 2265 0.1595 0.2196 -- 100.0
X Ray Diffraction 2.03 2.065 -- 147 2292 0.1562 0.1903 -- 100.0
X Ray Diffraction 2.065 2.1025 -- 141 2293 0.1503 0.1667 -- 100.0
X Ray Diffraction 2.1025 2.143 -- 140 2303 0.1474 0.1622 -- 100.0
X Ray Diffraction 2.143 2.1867 -- 144 2289 0.1457 0.1564 -- 100.0
X Ray Diffraction 2.1867 2.2343 -- 143 2318 0.1377 0.1782 -- 100.0
X Ray Diffraction 2.2343 2.2862 -- 135 2308 0.129 0.1497 -- 100.0
X Ray Diffraction 2.2862 2.3434 -- 145 2273 0.1273 0.1573 -- 100.0
X Ray Diffraction 2.3434 2.4067 -- 138 2281 0.1257 0.1843 -- 100.0
X Ray Diffraction 2.4067 2.4776 -- 146 2298 0.1289 0.1889 -- 100.0
X Ray Diffraction 2.4776 2.5575 -- 143 2308 0.1406 0.1861 -- 100.0
X Ray Diffraction 2.5575 2.6489 -- 139 2312 0.1344 0.1954 -- 100.0
X Ray Diffraction 2.6489 2.755 -- 140 2291 0.1309 0.1789 -- 100.0
X Ray Diffraction 2.755 2.8803 -- 145 2303 0.1343 0.1697 -- 100.0
X Ray Diffraction 2.8803 3.0321 -- 139 2292 0.134 0.1682 -- 100.0
X Ray Diffraction 3.0321 3.222 -- 148 2285 0.141 0.1753 -- 100.0
X Ray Diffraction 3.222 3.4707 -- 142 2293 0.1423 0.173 -- 100.0
X Ray Diffraction 3.4707 3.8198 -- 146 2304 0.1343 0.1608 -- 100.0
X Ray Diffraction 3.8198 4.372 -- 143 2294 0.1273 0.1455 -- 100.0
X Ray Diffraction 4.372 5.5064 -- 145 2304 0.1239 0.1417 -- 100.0
X Ray Diffraction 5.5064 42.3518 -- 138 2273 0.1477 0.15 -- 99.0
RMS Deviations
Key Refinement Restraint Deviation
f_angle_d 1.316
f_bond_d 0.012
f_plane_restr 0.007
f_dihedral_angle_d 12.705
f_chiral_restr 0.057
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers

Software

Software
Software Name Purpose
PHENIX refinement version: (phenix.refine: 1.9_1692)
Coot model building
CNS phasing
DENZO data reduction
SCALEPACK data scaling