X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 8
Temperature 277.0
Details 1.0M LiCl, 0.1M TRIS pH8.0, 20% PEG6K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 95.08 α = 90
b = 95.08 β = 90
c = 80.84 γ = 120
Symmetry
Space Group P 65

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD RIGAKU SATURN 92 -- 2013-11-24
Diffraction Radiation
Monochromator Protocol
VariMax HF SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
ROTATING ANODE RIGAKU FR-E SUPERBRIGHT 1.5418 -- --

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.7 29.04 99.7 0.075 -- -- 2.6 -- 11535 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.7 2.8 99.8 0.457 -- 2.28 2.6 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.7 29.04 -- -- -- 10915 549 99.65 -- 0.1835 0.181 0.2375 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.7 2.77 -- 38 808 0.333 0.38 -- 99.88
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 49.747
Anisotropic B[1][1] 0.23
Anisotropic B[1][2] 0.23
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] 0.23
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -0.76
RMS Deviations
Key Refinement Restraint Deviation
r_scangle_other 4.212
r_bond_refined_d 0.011
r_angle_other_deg 0.782
r_gen_planes_refined 0.005
r_gen_planes_other 0.001
r_chiral_restr 0.078
r_bond_other_d 0.001
r_mcangle_other 4.612
r_mcbond_other 2.836
r_mcbond_it 2.835
r_dihedral_angle_4_deg 14.019
r_long_range_B_refined 6.757
r_dihedral_angle_2_deg 34.256
r_dihedral_angle_3_deg 16.021
r_scbond_it 2.573
r_angle_refined_deg 1.409
r_long_range_B_other 6.749
r_dihedral_angle_1_deg 6.018
r_mcangle_it 4.614
r_scbond_other 2.572
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms --
Nucleic Acid Atoms --
Heterogen Atoms --
Solvent Atoms --

Software

Software
Software Name Purpose
REFMAC refinement version: 5.7.0032
MOLREP phasing