X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion
Temperature 277.0
Details 0.2M sodium acetate trihydrate pH 7.0 and 20% PEG 3350

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 40.49 α = 63.58
b = 83.65 β = 86.84
c = 84.03 γ = 85.2
Symmetry
Space Group P 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD MARMOSAIC 225 mm CCD -- 2009-04-16
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SLS BEAMLINE X06DA 1 SLS X06DA

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.29 36.4 96.4 -- -- -- 3.93 -- 42571 -- -- 47.28

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.29 18.76 -- 0.0 -- 42529 2152 96.15 -- 0.2041 0.2023 0.2379 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.29 2.35 -- 149 2587 0.2371 0.3022 -- 96.15
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 52.87
Anisotropic B[1][1] -22.8595
Anisotropic B[1][2] -9.1779
Anisotropic B[1][3] 3.194
Anisotropic B[2][2] 11.3346
Anisotropic B[2][3] 3.7272
Anisotropic B[3][3] 11.5249
RMS Deviations
Key Refinement Restraint Deviation
t_angle_deg 1.16
t_other_torsion 14.88
t_bond_d 0.01
t_omega_torsion 3.32
Coordinate Error
Parameter Value
Luzzati ESD (Observed) 0.343
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 10445
Nucleic Acid Atoms 0
Heterogen Atoms 0
Solvent Atoms 217

Software

Software
Software Name Purpose
BUSTER refinement version: 2.10.0