X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Batch Mode
Temperature 298.0
Details SPG buffer, PEG 1500

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 86.25 α = 90
b = 141.87 β = 116.38
c = 98.33 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL PSI PILATUS 6M -- 2013-09-29
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON NSLS BEAMLINE X25 1.1 NSLS X25

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.6 50 99.6 0.153 -- 7.338 3.8 -- 66014 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.6 2.64 92.8 -- -- -- 3.0 3038

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.6 50.0 -- 0.0 -- 65672 3322 98.65 -- 0.2152 0.2136 0.2439 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.6 2.649 -- 220 4043 0.377 0.384 -- 86.52
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 41.654
Anisotropic B[1][1] 1.53
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] -0.65
Anisotropic B[2][2] 0.06
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -0.64
RMS Deviations
Key Refinement Restraint Deviation
r_dihedral_angle_2_deg 38.024
r_dihedral_angle_1_deg 5.199
r_gen_planes_other 0.004
r_bond_other_d 0.004
r_gen_planes_refined 0.007
r_angle_refined_deg 1.49
r_dihedral_angle_4_deg 13.622
r_mcbond_other 2.327
r_chiral_restr 0.093
r_bond_refined_d 0.012
r_dihedral_angle_3_deg 15.827
r_mcangle_it 3.694
r_mcbond_it 2.327
r_angle_other_deg 0.9
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 15732
Nucleic Acid Atoms 0
Heterogen Atoms 372
Solvent Atoms 15

Software

Software
Software Name Purpose
HKL-2000 data reduction
REFMAC refinement version: 5.8.0049
PDB_EXTRACT data extraction version: 3.14
HKL data scaling