X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 6
Temperature 293.0
Details 0.15 M Calcium acetate, 0.1 M sodium cacodylate pH 6.0, 6-10 % Isopropanol

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 160.18 α = 90
b = 160.18 β = 90
c = 127.91 γ = 120
Symmetry
Space Group P 61

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315r -- 2013-06-18
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ESRF BEAMLINE ID14-4 0.9393 ESRF ID14-4

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
3.6 67.89 100.0 -- 0.15 -- 5.6 -- 21728 -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 3.601 67.88 -- 1.06 -- 42271 2217 99.45 -- 0.1784 0.1762 0.2168 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 3.601 3.7293 -- 189 4078 0.3163 0.3868 -- 100.0
X Ray Diffraction 3.7293 3.8786 -- 226 3991 0.2744 0.3047 -- 100.0
X Ray Diffraction 3.8786 4.0552 -- 225 3976 0.2323 0.2731 -- 100.0
X Ray Diffraction 4.0552 4.2689 -- 241 4026 0.1991 0.2467 -- 99.0
X Ray Diffraction 4.2689 4.5363 -- 206 3991 0.1592 0.2052 -- 100.0
X Ray Diffraction 4.5363 4.8865 -- 243 4002 0.1313 0.1601 -- 99.0
X Ray Diffraction 4.8865 5.3781 -- 232 4002 0.1412 0.1829 -- 100.0
X Ray Diffraction 5.3781 6.1558 -- 255 3987 0.1569 0.2104 -- 100.0
X Ray Diffraction 6.1558 7.7539 -- 200 4010 0.1635 0.2129 -- 100.0
X Ray Diffraction 7.7539 67.8933 -- 200 3991 0.1629 0.2004 -- 98.0
RMS Deviations
Key Refinement Restraint Deviation
f_dihedral_angle_d 11.574
f_chiral_restr 0.026
f_bond_d 0.003
f_plane_restr 0.003
f_angle_d 0.707
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers

Software

Software
Software Name Purpose
PHENIX refinement version: (phenix.refine: 1.9_1692)