X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 134.3 α = 90
b = 53.98 β = 90.11
c = 134.79 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 200
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315r -- 2011-05-20
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SSRF BEAMLINE BL17U 0.9791 SSRF BL17U

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.3 20.02 99.8 -- -- -- 3.7 43485 42616 261.7 57.3 --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.3 2.34 98.4 -- -- -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
SAD 2.31 20.02 -- 0.04 -- 41197 1943 96.33 -- 0.1991 0.1974 0.2338 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.3103 2.3927 -- 175 3506 0.2247 0.292 -- 86.0
X Ray Diffraction 2.3927 2.4883 -- 188 3779 0.2154 0.2805 -- 94.0
X Ray Diffraction 2.4883 2.6014 -- 190 3873 0.2149 0.272 -- 95.0
X Ray Diffraction 2.6014 2.7382 -- 190 3860 0.2129 0.2703 -- 96.0
X Ray Diffraction 2.7382 2.9093 -- 193 3925 0.2062 0.2537 -- 97.0
X Ray Diffraction 2.9093 3.1331 -- 201 4015 0.2138 0.2525 -- 98.0
X Ray Diffraction 3.1331 3.447 -- 196 3996 0.1965 0.2417 -- 99.0
X Ray Diffraction 3.447 3.9424 -- 198 4028 0.1816 0.206 -- 99.0
X Ray Diffraction 3.9424 4.9546 -- 205 4101 0.1658 0.1853 -- 99.0
X Ray Diffraction 4.9546 20.0209 -- 207 4171 0.2111 0.2355 -- 99.0
Temperature Factor Modeling
Temperature Factor Value
Anisotropic B[1][1] -0.986
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] -0.4349
Anisotropic B[2][2] 3.9501
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -2.9641
RMS Deviations
Key Refinement Restraint Deviation
f_bond_d 0.008
f_angle_d 1.108
f_dihedral_angle_d 18.329
f_chiral_restr 0.075
f_plane_restr 0.005
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 6587
Nucleic Acid Atoms 0
Heterogen Atoms 152
Solvent Atoms 295

Software

Software
Software Name Purpose
Blu-Ice data collection
PHENIX model building
PHENIX refinement version: (phenix.refine: 1.6.3_473)
HKL-2000 data reduction
HKL-2000 data scaling
PHENIX phasing