X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 5.5
Temperature 295.0
Details 0.2 M lithium sulfate, 0.1 M bis-tris, 25% PEG 3350, 8.5% glycerol, 1.0 mM adenosine-2',5'-diphosphate, 2.0 mM manganese sulfate

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 73.22 α = 90
b = 141.69 β = 90
c = 213.22 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315 -- 2011-12-04
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 24-ID-C 1.2863 APS 24-ID-C

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.96 47.98 97.2 -- 0.075 -- 4.8 -- 154682 -- -- 27.5
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.96 2.07 92.0 0.5 -- 2.6 4.5 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.96 43.183 -- 1.37 -- 154587 7762 96.93 -- 0.1932 0.1911 0.2319 random
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.96 1.9823 -- 210 3799 0.3117 0.3747 -- 76.0
X Ray Diffraction 1.9823 2.0056 -- 268 4738 0.2785 0.3473 -- 96.0
X Ray Diffraction 2.0056 2.0301 -- 288 4824 0.2582 0.3324 -- 96.0
X Ray Diffraction 2.0301 2.0558 -- 250 4795 0.2487 0.3048 -- 96.0
X Ray Diffraction 2.0558 2.0828 -- 262 4812 0.2395 0.2973 -- 96.0
X Ray Diffraction 2.0828 2.1113 -- 251 4826 0.2376 0.2736 -- 97.0
X Ray Diffraction 2.1113 2.1415 -- 254 4828 0.2339 0.315 -- 97.0
X Ray Diffraction 2.1415 2.1735 -- 239 4879 0.2303 0.2833 -- 97.0
X Ray Diffraction 2.1735 2.2074 -- 225 4874 0.2189 0.2758 -- 97.0
X Ray Diffraction 2.2074 2.2436 -- 284 4828 0.2151 0.2641 -- 97.0
X Ray Diffraction 2.2436 2.2823 -- 246 4908 0.2122 0.2728 -- 97.0
X Ray Diffraction 2.2823 2.3238 -- 259 4838 0.2128 0.2793 -- 97.0
X Ray Diffraction 2.3238 2.3685 -- 269 4895 0.2116 0.2582 -- 97.0
X Ray Diffraction 2.3685 2.4168 -- 246 4898 0.2087 0.2564 -- 98.0
X Ray Diffraction 2.4168 2.4694 -- 274 4858 0.2185 0.2892 -- 98.0
X Ray Diffraction 2.4694 2.5268 -- 245 4959 0.2166 0.2647 -- 98.0
X Ray Diffraction 2.5268 2.59 -- 266 4899 0.1985 0.2325 -- 98.0
X Ray Diffraction 2.59 2.66 -- 255 4937 0.2003 0.2336 -- 98.0
X Ray Diffraction 2.66 2.7383 -- 241 4937 0.2123 0.2659 -- 98.0
X Ray Diffraction 2.7383 2.8267 -- 285 4949 0.2071 0.2581 -- 98.0
X Ray Diffraction 2.8267 2.9277 -- 285 4945 0.1976 0.2447 -- 98.0
X Ray Diffraction 2.9277 3.0449 -- 250 4996 0.1937 0.2485 -- 98.0
X Ray Diffraction 3.0449 3.1834 -- 257 4982 0.1984 0.2202 -- 98.0
X Ray Diffraction 3.1834 3.3512 -- 246 4974 0.1875 0.2159 -- 98.0
X Ray Diffraction 3.3512 3.561 -- 260 4998 0.1836 0.2175 -- 98.0
X Ray Diffraction 3.561 3.8358 -- 262 5024 0.1812 0.2076 -- 98.0
X Ray Diffraction 3.8358 4.2215 -- 280 5035 0.1631 0.2044 -- 99.0
X Ray Diffraction 4.2215 4.8317 -- 272 5071 0.1383 0.1628 -- 99.0
X Ray Diffraction 4.8317 6.0847 -- 251 5171 0.1534 0.1938 -- 99.0
X Ray Diffraction 6.0847 43.1935 -- 282 5348 0.1617 0.1775 -- 99.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 29.0
RMS Deviations
Key Refinement Restraint Deviation
f_chiral_restr 0.08
f_bond_d 0.008
f_dihedral_angle_d 14.474
f_angle_d 1.135
f_plane_restr 0.005
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers

Software

Software
Software Name Purpose
PHENIX refinement version: (phenix.refine: 1.8.4_1496)