X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 6
Temperature 293.0
Details 10% isopropanol, 10% PEG 3350, 0.1 M MES

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 83.21 α = 90
b = 85.75 β = 104.84
c = 104.47 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS 6M -- 2013-12-15
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2) 0.976 PETRA III, EMBL c/o DESY P14 (MX2)

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.8 47.05 94.9 0.048 -- -- 6.44 124752 123486 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.8 1.9 73.0 0.55 -- 3.48 5.2 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
-- 1.8 47.0 -- -- -- 123486 1265 94.94 -- 0.16147 0.16126 0.18264 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.8 1.847 -- 66 6497 0.241 0.278 -- 68.04
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 27.053
Anisotropic B[1][1] -0.3
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] -0.36
Anisotropic B[2][2] -0.27
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 0.59
RMS Deviations
Key Refinement Restraint Deviation
r_long_range_B_refined 7.333
r_mcbond_it 1.858
r_gen_planes_refined 0.009
r_dihedral_angle_4_deg 14.991
r_dihedral_angle_1_deg 6.529
r_mcbond_other 1.856
r_scangle_other 4.041
r_long_range_B_other 7.333
r_angle_refined_deg 1.528
r_angle_other_deg 1.489
r_bond_refined_d 0.013
r_mcangle_other 2.741
r_chiral_restr 0.097
r_dihedral_angle_3_deg 12.679
r_bond_other_d 0.009
r_scbond_other 2.637
r_mcangle_it 2.741
r_gen_planes_other 0.007
r_scbond_it 2.641
r_dihedral_angle_2_deg 30.688
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms --
Nucleic Acid Atoms --
Heterogen Atoms --
Solvent Atoms --

Software

Software
Software Name Purpose
XDS data scaling
PHASER phasing
REFMAC refinement version: 5.7.0032