X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
pH 6.5
Temperature 292.0
Details 100 mM Hepes,22% PEG 6000, 150mM NaCl, 10% glycerol

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 73.51 α = 90
b = 109.77 β = 90
c = 195.03 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
IMAGE PLATE MAR scanner 300 mm plate -- 1995-08-10
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SRS BEAMLINE PX9.5 0.9215 SRS PX9.5

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.95 68.8 96.8 -- 0.091 -- 2.7 -- 118029 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.95 2.0 97.2 0.658 -- 1.8 2.6 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
-- 1.95 68.786 -- 1.33 -- 113382 4526 98.08 -- 0.1757 0.1743 0.2077 Random
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.95 1.9722 -- 132 3625 0.2779 0.3215 -- 98.0
X Ray Diffraction 1.9722 1.9954 -- 139 3581 0.258 0.2914 -- 98.0
X Ray Diffraction 1.9954 2.0197 -- 162 3555 0.2515 0.295 -- 98.0
X Ray Diffraction 2.0197 2.0453 -- 152 3571 0.2404 0.2848 -- 97.0
X Ray Diffraction 2.0453 2.0722 -- 131 3597 0.2325 0.2393 -- 98.0
X Ray Diffraction 2.0722 2.1006 -- 135 3610 0.2174 0.2814 -- 97.0
X Ray Diffraction 2.1006 2.1306 -- 169 3557 0.2175 0.2737 -- 98.0
X Ray Diffraction 2.1306 2.1624 -- 151 3608 0.2051 0.2293 -- 97.0
X Ray Diffraction 2.1624 2.1962 -- 164 3573 0.2022 0.2191 -- 99.0
X Ray Diffraction 2.1962 2.2322 -- 156 3556 0.1917 0.2288 -- 98.0
X Ray Diffraction 2.2322 2.2707 -- 141 3612 0.186 0.2114 -- 99.0
X Ray Diffraction 2.2707 2.312 -- 155 3605 0.1855 0.2282 -- 98.0
X Ray Diffraction 2.312 2.3564 -- 158 3605 0.1787 0.2414 -- 98.0
X Ray Diffraction 2.3564 2.4045 -- 143 3574 0.1769 0.204 -- 98.0
X Ray Diffraction 2.4045 2.4568 -- 161 3587 0.1771 0.2345 -- 97.0
X Ray Diffraction 2.4568 2.514 -- 153 3607 0.1717 0.2461 -- 98.0
X Ray Diffraction 2.514 2.5769 -- 166 3582 0.1695 0.2041 -- 98.0
X Ray Diffraction 2.5769 2.6465 -- 158 3588 0.1737 0.2381 -- 97.0
X Ray Diffraction 2.6465 2.7244 -- 138 3593 0.1688 0.2083 -- 97.0
X Ray Diffraction 2.7244 2.8123 -- 135 3647 0.1722 0.2063 -- 98.0
X Ray Diffraction 2.8123 2.9129 -- 165 3587 0.1737 0.2169 -- 98.0
X Ray Diffraction 2.9129 3.0295 -- 152 3594 0.1653 0.1988 -- 98.0
X Ray Diffraction 3.0295 3.1674 -- 140 3640 0.172 0.1956 -- 97.0
X Ray Diffraction 3.1674 3.3344 -- 159 3588 0.163 0.1797 -- 97.0
X Ray Diffraction 3.3344 3.5433 -- 160 3622 0.1649 0.1754 -- 98.0
X Ray Diffraction 3.5433 3.8168 -- 131 3725 0.1574 0.2111 -- 99.0
X Ray Diffraction 3.8168 4.2009 -- 149 3731 0.1421 0.1754 -- 99.0
X Ray Diffraction 4.2009 4.8086 -- 145 3774 0.1325 0.1543 -- 100.0
X Ray Diffraction 4.8086 6.0578 -- 153 3825 0.1559 0.1848 -- 100.0
X Ray Diffraction 6.0578 68.8289 -- 173 3937 0.1737 0.1827 -- 99.0
RMS Deviations
Key Refinement Restraint Deviation
f_angle_d 1.35
f_dihedral_angle_d 13.888
f_bond_d 0.013
f_chiral_restr 0.054
f_plane_restr 0.007
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 9788
Nucleic Acid Atoms 0
Heterogen Atoms 38
Solvent Atoms 1402

Software

Software
Software Name Purpose
PHENIX refinement version: (phenix.refine: dev_1593)