X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
Temperature 295.0
Details PEG 1500, MIB Buffer

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 74.33 α = 90
b = 88.38 β = 90
c = 167.19 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315 -- 2013-08-15
Diffraction Radiation
Monochromator Protocol
-- MAD
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 24-ID-C 0.9792, 1.907 APS 24-ID-C

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.44 47.14 98.86 0.089 -- -- 6.3 -- 41769 -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
-- 2.44 47.14 -- 21.8 -- 41769 2000 99.86 -- 0.2124 0.2102 0.2556 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.44 2.5001 -- 140 2795 0.283 0.3147 -- 100.0
X Ray Diffraction 2.5001 2.5677 -- 142 2810 0.2715 0.3344 -- 100.0
X Ray Diffraction 2.5677 2.6433 -- 140 2787 0.2664 0.3342 -- 100.0
X Ray Diffraction 2.6433 2.7286 -- 141 2797 0.266 0.3301 -- 100.0
X Ray Diffraction 2.7286 2.8261 -- 141 2820 0.2636 0.329 -- 100.0
X Ray Diffraction 2.8261 2.9392 -- 141 2802 0.2585 0.3173 -- 100.0
X Ray Diffraction 2.9392 3.073 -- 141 2809 0.2616 0.3232 -- 100.0
X Ray Diffraction 3.073 3.235 -- 142 2830 0.2531 0.2758 -- 100.0
X Ray Diffraction 3.235 3.4376 -- 144 2828 0.2372 0.3059 -- 100.0
X Ray Diffraction 3.4376 3.7029 -- 142 2846 0.2169 0.2652 -- 100.0
X Ray Diffraction 3.7029 4.0754 -- 143 2842 0.1934 0.2467 -- 100.0
X Ray Diffraction 4.0754 4.6646 -- 144 2877 0.1563 0.1995 -- 100.0
X Ray Diffraction 4.6646 5.8752 -- 146 2888 0.1625 0.2128 -- 100.0
X Ray Diffraction 5.8752 47.1496 -- 153 3038 0.1863 0.1895 -- 100.0
RMS Deviations
Key Refinement Restraint Deviation
f_dihedral_angle_d 14.186
f_angle_d 0.846
f_bond_d 0.003
f_chiral_restr 0.031
f_plane_restr 0.003
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 7143
Nucleic Acid Atoms 0
Heterogen Atoms 138
Solvent Atoms 212

Software

Software
Software Name Purpose
PHENIX refinement version: (phenix.refine: dev_1452)