X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
pH 6.5
Temperature 289.0
Details 0.2 M Sodium Chloride, 0.1 M Bis-Tris:HCl, 25% (w/v) PEG 3350, 10 mM Isoleucine, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 289K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 97.91 α = 90
b = 101.18 β = 90
c = 149.58 γ = 90
Symmetry
Space Group C 2 2 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315r mirror 2013-11-27
Diffraction Radiation
Monochromator Protocol
Si 111 crystal SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 19-ID 0.97918 APS 19-ID

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.2 20.5 98.3 0.072 -- -- 5.8 226601 226601 0.0 -5.0 9.5
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.2 1.22 84.6 0.36 -- 4.5 4.8 7790

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.199 20.488 -- 1.34 226493 226493 11361 98.23 0.1302 0.1302 0.1291 0.1499 Random
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.1987 1.2123 -- 334 5902 0.1721 0.1956 -- 82.0
X Ray Diffraction 1.2123 1.2266 -- 329 6365 0.1596 0.1726 -- 88.0
X Ray Diffraction 1.2266 1.2416 -- 346 6710 0.1591 0.1744 -- 92.0
X Ray Diffraction 1.2416 1.2573 -- 373 6954 0.155 0.1911 -- 96.0
X Ray Diffraction 1.2573 1.2738 -- 382 7019 0.1455 0.1825 -- 98.0
X Ray Diffraction 1.2738 1.2913 -- 366 7157 0.1402 0.1561 -- 98.0
X Ray Diffraction 1.2913 1.3097 -- 365 7190 0.1356 0.168 -- 99.0
X Ray Diffraction 1.3097 1.3292 -- 410 7233 0.1296 0.1592 -- 100.0
X Ray Diffraction 1.3292 1.35 -- 374 7241 0.1267 0.1504 -- 100.0
X Ray Diffraction 1.35 1.3721 -- 368 7254 0.1229 0.1578 -- 100.0
X Ray Diffraction 1.3721 1.3958 -- 400 7228 0.1213 0.1595 -- 100.0
X Ray Diffraction 1.3958 1.4212 -- 390 7281 0.1186 0.1442 -- 100.0
X Ray Diffraction 1.4212 1.4485 -- 400 7255 0.1099 0.133 -- 100.0
X Ray Diffraction 1.4485 1.4781 -- 388 7256 0.1079 0.1283 -- 100.0
X Ray Diffraction 1.4781 1.5102 -- 392 7273 0.1031 0.1419 -- 100.0
X Ray Diffraction 1.5102 1.5453 -- 377 7255 0.099 0.1194 -- 100.0
X Ray Diffraction 1.5453 1.5839 -- 377 7294 0.0973 0.1209 -- 100.0
X Ray Diffraction 1.5839 1.6267 -- 407 7278 0.1056 0.1251 -- 100.0
X Ray Diffraction 1.6267 1.6746 -- 363 7290 0.1094 0.141 -- 100.0
X Ray Diffraction 1.6746 1.7286 -- 373 7282 0.1115 0.1467 -- 100.0
X Ray Diffraction 1.7286 1.7904 -- 409 7273 0.1175 0.1472 -- 100.0
X Ray Diffraction 1.7904 1.862 -- 388 7324 0.1204 0.1317 -- 100.0
X Ray Diffraction 1.862 1.9467 -- 377 7312 0.1218 0.1425 -- 100.0
X Ray Diffraction 1.9467 2.0492 -- 385 7283 0.1237 0.1469 -- 100.0
X Ray Diffraction 2.0492 2.1775 -- 377 7326 0.1237 0.1456 -- 100.0
X Ray Diffraction 2.1775 2.3454 -- 376 7375 0.1285 0.1496 -- 100.0
X Ray Diffraction 2.3454 2.581 -- 375 7353 0.1373 0.1384 -- 100.0
X Ray Diffraction 2.581 2.9535 -- 391 7392 0.1445 0.1614 -- 100.0
X Ray Diffraction 2.9535 3.7175 -- 391 7420 0.1394 0.1556 -- 100.0
X Ray Diffraction 3.7175 20.4905 -- 378 7357 0.1393 0.1594 -- 96.0
RMS Deviations
Key Refinement Restraint Deviation
f_chiral_restr 0.079
f_bond_d 0.006
f_dihedral_angle_d 13.15
f_plane_restr 0.006
f_angle_d 1.123
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 5445
Nucleic Acid Atoms 0
Heterogen Atoms 22
Solvent Atoms 943

Software

Software
Software Name Purpose
SBC-Collect data collection
MOLREP phasing
PHENIX refinement version: (phenix.refine: 1.8.2_1309)
HKL-3000 data reduction
HKL-3000 data scaling