X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 7.4
Temperature 292.0
Details PEG 4K, ammonium sulfate, pH 7.4, VAPOR DIFFUSION, HANGING DROP, temperature 292K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 112.52 α = 90
b = 193.83 β = 90
c = 108.17 γ = 90
Symmetry
Space Group C 2 2 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
IMAGE PLATE RIGAKU RAXIS IV -- 2006-08-01
Diffraction Radiation
Monochromator Protocol
GRAPHITE SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ESRF BEAMLINE ID14-4 0.979 ESRF ID14-4

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.4 30 98.6 -- -- -- -- -- 443997 2.0 2.0 --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.4 -- 98.0 -- -- -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
SAD 1.399 28.969 -- 1.35 215489 226809 11363 98.19 -- 0.1882 0.1877 0.1971 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.3991 1.415 -- 354 6648 0.3194 0.3094 -- 92.0
X Ray Diffraction 1.415 1.4317 -- 393 7122 0.3041 0.3253 -- 98.0
X Ray Diffraction 1.4317 1.4491 -- 382 7101 0.2895 0.292 -- 98.0
X Ray Diffraction 1.4491 1.4675 -- 387 7151 0.2867 0.2792 -- 98.0
X Ray Diffraction 1.4675 1.4868 -- 385 7192 0.2723 0.2758 -- 99.0
X Ray Diffraction 1.4868 1.5072 -- 345 7171 0.268 0.2855 -- 99.0
X Ray Diffraction 1.5072 1.5287 -- 367 7199 0.2525 0.2632 -- 99.0
X Ray Diffraction 1.5287 1.5515 -- 357 7174 0.2369 0.2489 -- 99.0
X Ray Diffraction 1.5515 1.5758 -- 385 7240 0.231 0.255 -- 99.0
X Ray Diffraction 1.5758 1.6016 -- 382 7189 0.2248 0.2365 -- 99.0
X Ray Diffraction 1.6016 1.6292 -- 398 7169 0.2169 0.2375 -- 99.0
X Ray Diffraction 1.6292 1.6588 -- 389 7247 0.2094 0.2331 -- 99.0
X Ray Diffraction 1.6588 1.6907 -- 396 7150 0.2065 0.2067 -- 99.0
X Ray Diffraction 1.6907 1.7252 -- 385 7236 0.2104 0.221 -- 99.0
X Ray Diffraction 1.7252 1.7627 -- 374 7247 0.2049 0.2155 -- 99.0
X Ray Diffraction 1.7627 1.8037 -- 388 7247 0.1902 0.221 -- 99.0
X Ray Diffraction 1.8037 1.8488 -- 382 7229 0.1792 0.1801 -- 100.0
X Ray Diffraction 1.8488 1.8988 -- 408 7289 0.1805 0.1809 -- 100.0
X Ray Diffraction 1.8988 1.9547 -- 380 7231 0.1806 0.1975 -- 100.0
X Ray Diffraction 1.9547 2.0178 -- 393 7288 0.169 0.1868 -- 100.0
X Ray Diffraction 2.0178 2.0899 -- 397 7287 0.1759 0.1961 -- 100.0
X Ray Diffraction 2.0899 2.1735 -- 347 7320 0.1654 0.1777 -- 100.0
X Ray Diffraction 2.1735 2.2724 -- 392 7310 0.1712 0.1899 -- 100.0
X Ray Diffraction 2.2724 2.3921 -- 408 7317 0.1742 0.1784 -- 100.0
X Ray Diffraction 2.3921 2.5419 -- 368 7331 0.1674 0.1793 -- 100.0
X Ray Diffraction 2.5419 2.7381 -- 383 7361 0.1702 0.167 -- 100.0
X Ray Diffraction 2.7381 3.0133 -- 386 7344 0.1689 0.1765 -- 100.0
X Ray Diffraction 3.0133 3.4488 -- 352 7261 0.1598 0.1631 -- 98.0
X Ray Diffraction 3.4488 4.3427 -- 386 6875 0.1601 0.1754 -- 92.0
X Ray Diffraction 4.3427 28.9754 -- 314 6520 0.2152 0.2179 -- 85.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 25.714
Anisotropic B[1][1] 0.03
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] -0.07
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 0.04
RMS Deviations
Key Refinement Restraint Deviation
f_dihedral_angle_d 13.201
f_plane_restr 0.007
f_chiral_restr 0.074
f_bond_d 0.01
f_angle_d 1.479
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 6180
Nucleic Acid Atoms 0
Heterogen Atoms 187
Solvent Atoms 1289

Software

Software
Software Name Purpose
HKL-2000 data collection
SHARP phasing
REFMAC refinement version: 5.2.0019
HKL-2000 data reduction
HKL-2000 data scaling
PHENIX refinement version: dev_1593