X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 6.5
Temperature 285.0
Details 100mM MES, 100-150mM CaCl2, 25-30%(v/v) PEG400, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 285K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 40.72 α = 73.88
b = 64.04 β = 82.29
c = 71.7 γ = 84.03
Symmetry
Space Group P 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 210r mirrors 2011-08-04
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX1 0.95 Australian Synchrotron MX1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.8 68.46 95.9 -- 0.064 -- 3.9 61187 61187 -2.0 -2.0 --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.8 1.9 94.7 0.399 0.399 1.9 3.8 8833

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.8 28.32 -- 0.0 8833 61186 3080 95.95 -- 0.1879 0.1859 0.2243 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.8 1.847 -- 224 4278 0.264 0.303 -- 94.6
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 21.1362
Anisotropic B[1][1] 0.0
Anisotropic B[1][2] -0.01
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] 0.0
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 0.0
RMS Deviations
Key Refinement Restraint Deviation
r_angle_other_deg 0.714
r_chiral_restr 0.074
r_dihedral_angle_3_deg 14.349
r_dihedral_angle_2_deg 36.649
r_angle_refined_deg 1.282
r_gen_planes_refined 0.005
r_bond_other_d 0.001
r_dihedral_angle_1_deg 5.854
r_dihedral_angle_4_deg 15.491
r_gen_planes_other 0.001
r_bond_refined_d 0.007
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 5564
Nucleic Acid Atoms 0
Heterogen Atoms 88
Solvent Atoms 521

Software

Software
Software Name Purpose
SCALA data scaling version: 3.3.16
REFMAC refinement version: 5.7.0029
PDB_EXTRACT data extraction version: 3.11
ADSC data collection version: Quantum
MOSFLM data reduction
MOLREP phasing