X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 6.5
Temperature 293.0
Details 0.1 M bis-tris 6.5, 25% PEG 3350, VAPOR DIFFUSION, HANGING DROP, temperature 293K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 135.76 α = 90
b = 68.17 β = 94.03
c = 35.91 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD MARMOSAIC 300 mm CCD -- 2011-10-29
Diffraction Radiation
Monochromator Protocol
C(111) SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 21-ID-G 0.97856 APS 21-ID-G

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.3 50 99.6 0.051 0.051 -- 7.4 -- 79869 0.0 -3.0 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.3 34.086 -- 1.37 103943 79862 3979 99.6 -- 0.154 0.1534 0.1646 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.3 1.3158 -- 127 2645 0.1794 0.1864 -- 96.0
X Ray Diffraction 1.3158 1.3325 -- 143 2691 0.1702 0.1673 -- 99.0
X Ray Diffraction 1.3325 1.35 -- 143 2661 0.1657 0.187 -- 100.0
X Ray Diffraction 1.35 1.3685 -- 138 2726 0.1677 0.1696 -- 100.0
X Ray Diffraction 1.3685 1.3881 -- 136 2730 0.1709 0.1824 -- 100.0
X Ray Diffraction 1.3881 1.4088 -- 151 2659 0.1676 0.2044 -- 100.0
X Ray Diffraction 1.4088 1.4308 -- 147 2724 0.1599 0.1592 -- 100.0
X Ray Diffraction 1.4308 1.4543 -- 137 2730 0.1601 0.1742 -- 100.0
X Ray Diffraction 1.4543 1.4794 -- 142 2688 0.1566 0.1659 -- 100.0
X Ray Diffraction 1.4794 1.5063 -- 141 2720 0.1485 0.1837 -- 100.0
X Ray Diffraction 1.5063 1.5352 -- 146 2693 0.1446 0.1872 -- 100.0
X Ray Diffraction 1.5352 1.5666 -- 135 2726 0.146 0.155 -- 100.0
X Ray Diffraction 1.5666 1.6006 -- 142 2707 0.143 0.1567 -- 100.0
X Ray Diffraction 1.6006 1.6379 -- 152 2723 0.1462 0.1607 -- 100.0
X Ray Diffraction 1.6379 1.6788 -- 131 2723 0.1468 0.1556 -- 100.0
X Ray Diffraction 1.6788 1.7242 -- 147 2713 0.1537 0.1747 -- 100.0
X Ray Diffraction 1.7242 1.7749 -- 148 2691 0.1535 0.1669 -- 100.0
X Ray Diffraction 1.7749 1.8322 -- 141 2734 0.1544 0.1613 -- 100.0
X Ray Diffraction 1.8322 1.8977 -- 139 2731 0.1582 0.1663 -- 100.0
X Ray Diffraction 1.8977 1.9737 -- 146 2688 0.1552 0.1612 -- 100.0
X Ray Diffraction 1.9737 2.0635 -- 141 2738 0.1494 0.1445 -- 100.0
X Ray Diffraction 2.0635 2.1723 -- 155 2693 0.1539 0.1592 -- 100.0
X Ray Diffraction 2.1723 2.3083 -- 140 2729 0.1547 0.1881 -- 100.0
X Ray Diffraction 2.3083 2.4865 -- 137 2744 0.1588 0.1575 -- 100.0
X Ray Diffraction 2.4865 2.7367 -- 148 2740 0.1653 0.1625 -- 100.0
X Ray Diffraction 2.7367 3.1324 -- 147 2712 0.1607 0.1688 -- 100.0
X Ray Diffraction 3.1324 3.9456 -- 139 2690 0.1448 0.1651 -- 97.0
X Ray Diffraction 3.9456 34.0972 -- 140 2734 0.1393 0.1475 -- 97.0
RMS Deviations
Key Refinement Restraint Deviation
f_dihedral_angle_d 19.019
f_angle_d 1.14
f_plane_restr 0.007
f_bond_d 0.006
f_chiral_restr 0.048
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 2195
Nucleic Acid Atoms 0
Heterogen Atoms 28
Solvent Atoms 278

Software

Software
Software Name Purpose
HKL-2000 data collection
PHENIX model building version: (phenix.refine: 1.8_1069)
PHENIX refinement version: (phenix.refine: 1.8_1069)
HKL-2000 data reduction
HKL-2000 data scaling
PHENIX phasing version: 1.8_1069