X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 4
Temperature 296.0
Details pH 4.0, VAPOR DIFFUSION, HANGING DROP, temperature 296K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 179.84 α = 90
b = 59.78 β = 127.35
c = 137.07 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 270 -- 2011-11-28
Diffraction Radiation
Monochromator Protocol
Si(111) SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON NSLS BEAMLINE X6A 1.0332 NSLS X6A

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.63 50 93.9 -- -- -- -- -- 134437 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.63 1.66 49.5 -- -- -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.8 45.341 -- 1.35 -- 106410 5302 98.94 -- 0.1875 0.186 0.2162 Automatically generated
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.8 1.8205 -- 181 3301 0.2645 0.2929 -- 98.0
X Ray Diffraction 1.8205 1.8419 -- 161 3291 0.2634 0.2851 -- 98.0
X Ray Diffraction 1.8419 1.8643 -- 170 3383 0.2586 0.2681 -- 98.0
X Ray Diffraction 1.8643 1.8879 -- 149 3313 0.2506 0.2695 -- 98.0
X Ray Diffraction 1.8879 1.9128 -- 173 3307 0.2686 0.2643 -- 98.0
X Ray Diffraction 1.9128 1.939 -- 162 3336 0.2379 0.2632 -- 98.0
X Ray Diffraction 1.939 1.9667 -- 175 3374 0.2304 0.3003 -- 99.0
X Ray Diffraction 1.9667 1.996 -- 171 3367 0.2205 0.2898 -- 99.0
X Ray Diffraction 1.996 2.0272 -- 187 3295 0.2116 0.2643 -- 99.0
X Ray Diffraction 2.0272 2.0605 -- 184 3394 0.207 0.2473 -- 99.0
X Ray Diffraction 2.0605 2.096 -- 176 3306 0.2063 0.2464 -- 99.0
X Ray Diffraction 2.096 2.1341 -- 166 3394 0.1998 0.2429 -- 99.0
X Ray Diffraction 2.1341 2.1752 -- 173 3328 0.1982 0.2484 -- 99.0
X Ray Diffraction 2.1752 2.2196 -- 163 3414 0.203 0.2351 -- 99.0
X Ray Diffraction 2.2196 2.2678 -- 179 3300 0.2017 0.2408 -- 98.0
X Ray Diffraction 2.2678 2.3206 -- 165 3370 0.2001 0.2497 -- 99.0
X Ray Diffraction 2.3206 2.3786 -- 190 3345 0.197 0.2352 -- 99.0
X Ray Diffraction 2.3786 2.4429 -- 194 3327 0.2023 0.252 -- 99.0
X Ray Diffraction 2.4429 2.5148 -- 182 3412 0.1967 0.2255 -- 99.0
X Ray Diffraction 2.5148 2.5959 -- 180 3396 0.1919 0.2128 -- 99.0
X Ray Diffraction 2.5959 2.6887 -- 168 3377 0.1987 0.2521 -- 99.0
X Ray Diffraction 2.6887 2.7963 -- 191 3375 0.2021 0.2444 -- 100.0
X Ray Diffraction 2.7963 2.9236 -- 168 3400 0.1895 0.2147 -- 99.0
X Ray Diffraction 2.9236 3.0777 -- 169 3422 0.1901 0.224 -- 100.0
X Ray Diffraction 3.0777 3.2705 -- 193 3403 0.1793 0.243 -- 100.0
X Ray Diffraction 3.2705 3.5229 -- 189 3427 0.1677 0.1897 -- 100.0
X Ray Diffraction 3.5229 3.8773 -- 166 3411 0.1499 0.1595 -- 100.0
X Ray Diffraction 3.8773 4.4379 -- 181 3455 0.1419 0.1492 -- 100.0
X Ray Diffraction 4.4379 5.5896 -- 205 3443 0.1447 0.1592 -- 100.0
X Ray Diffraction 5.5896 45.3557 -- 191 3442 0.1976 0.238 -- 97.0
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.005
f_bond_d 0.007
f_angle_d 1.161
f_chiral_restr 0.079
f_dihedral_angle_d 12.507
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 6878
Nucleic Acid Atoms 0
Heterogen Atoms 101
Solvent Atoms 1060

Software

Software
Software Name Purpose
HKL-2000 data collection
MOLREP phasing
PHENIX refinement version: (phenix.refine: 1.8.2_1309)
HKL-2000 data reduction
HKL-2000 data scaling