X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion
pH 7
Temperature 293.15
Details 0.1M BTP pH 7.0, 0.2M ammonium sulfate, 10% (w/v) polyethylene glycol 8000, 5mM dithiothreitol, VAPOR DIFFUSION, temperature 293.15K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 202.21 α = 90
b = 87.09 β = 105.47
c = 133.6 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315 -- --
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON NSLS BEAMLINE X25 1.1 NSLS X25

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.7 48.7 26.7 -- -- -- -- -- 61556 4.1 4.1 --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.7 -- 99.73 -- -- -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MAD 2.7 48.7 -- 1.36 -- 61547 3077 99.73 0.2259 0.2259 0.2235 0.2718 random
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.7 2.7422 -- 140 2658 0.3851 0.4628 -- 100.0
X Ray Diffraction 2.7422 2.7872 -- 138 2627 0.3457 0.407 -- 100.0
X Ray Diffraction 2.7872 2.8352 -- 138 2625 0.3308 0.4206 -- 100.0
X Ray Diffraction 2.8352 2.8868 -- 140 2651 0.313 0.3572 -- 100.0
X Ray Diffraction 2.8868 2.9423 -- 138 2630 0.2962 0.3443 -- 100.0
X Ray Diffraction 2.9423 3.0023 -- 142 2696 0.2907 0.3721 -- 100.0
X Ray Diffraction 3.0023 3.0676 -- 138 2622 0.2761 0.3513 -- 100.0
X Ray Diffraction 3.0676 3.1389 -- 139 2647 0.2707 0.3929 -- 100.0
X Ray Diffraction 3.1389 3.2174 -- 140 2661 0.2577 0.3098 -- 100.0
X Ray Diffraction 3.2174 3.3044 -- 139 2633 0.2396 0.3258 -- 100.0
X Ray Diffraction 3.3044 3.4016 -- 138 2629 0.2281 0.2508 -- 100.0
X Ray Diffraction 3.4016 3.5114 -- 142 2690 0.2193 0.3225 -- 100.0
X Ray Diffraction 3.5114 3.6368 -- 139 2639 0.2241 0.2793 -- 100.0
X Ray Diffraction 3.6368 3.7824 -- 140 2669 0.2151 0.2601 -- 100.0
X Ray Diffraction 3.7824 3.9545 -- 140 2655 0.2045 0.2687 -- 100.0
X Ray Diffraction 3.9545 4.1629 -- 139 2641 0.1971 0.2731 -- 100.0
X Ray Diffraction 4.1629 4.4235 -- 141 2677 0.1963 0.2238 -- 100.0
X Ray Diffraction 4.4235 4.7648 -- 140 2658 0.1875 0.2463 -- 100.0
X Ray Diffraction 4.7648 5.2438 -- 140 2662 0.2092 0.2279 -- 99.0
X Ray Diffraction 5.2438 6.0014 -- 140 2667 0.26 0.3062 -- 99.0
X Ray Diffraction 6.0014 7.5566 -- 142 2686 0.2272 0.2514 -- 99.0
X Ray Diffraction 7.5566 48.7289 -- 144 2747 0.1684 0.1812 -- 99.0
Temperature Factor Modeling
Temperature Factor Value
Anisotropic B[1][1] -1.2804
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] -5.453
Anisotropic B[2][2] -6.9437
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 8.2241
RMS Deviations
Key Refinement Restraint Deviation
f_chiral_restr 0.094
f_dihedral_angle_d 18.793
f_bond_d 0.009
f_angle_d 1.317
f_plane_restr 0.006
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 10752
Nucleic Acid Atoms 0
Heterogen Atoms 20
Solvent Atoms 68

Software

Software
Software Name Purpose
ADSC data collection version: Quantum
SHARP phasing
PHENIX refinement version: (phenix.refine: 1.7_650)
XDS data reduction
XDS data scaling