X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 4.6
Temperature 298.0
Details 15% MPD , pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 86.69 α = 90
b = 56.88 β = 93.99
c = 110.93 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS 2M -- --
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SLS BEAMLINE X06DA 1.0 SLS X06DA

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.48 50 100.0 0.059 -- -- 3.8 36659 36659 0.0 0.0 --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.48 2.61 100.0 0.522 -- 2.3 3.8 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.48 43.28 -- -- -- 36659 1919 99.68 -- 0.21644 0.21341 0.27671 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.48 2.544 -- 147 2680 0.428 0.519 -- 99.96
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 62.184
Anisotropic B[1][1] -3.87
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] -0.18
Anisotropic B[2][2] -3.44
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 7.26
RMS Deviations
Key Refinement Restraint Deviation
r_gen_planes_refined 0.008
r_chiral_restr 0.108
r_dihedral_angle_4_deg 19.447
r_dihedral_angle_2_deg 33.133
r_angle_refined_deg 1.763
r_dihedral_angle_3_deg 19.259
r_bond_refined_d 0.012
r_dihedral_angle_1_deg 7.072
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 5376
Nucleic Acid Atoms 1354
Heterogen Atoms 64
Solvent Atoms 106

Software

Software
Software Name Purpose
REFMAC refinement version: 5.7.0029