X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 65.42 α = 90
b = 93.88 β = 90
c = 145.63 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ALS BEAMLINE 8.2.1 -- ALS 8.2.1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.91 50 -- -- -- -- -- -- 67896 -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.907 48.665 -- 0.11 -- 67896 1924 96.06 -- 0.1891 0.188 0.2277 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.907 1.9544 -- 115 4167 0.2082 0.2521 -- 86.0
X Ray Diffraction 1.9544 2.0072 -- 125 4409 0.1887 0.232 -- 91.0
X Ray Diffraction 2.0072 2.0663 -- 132 4469 0.1776 0.2313 -- 93.0
X Ray Diffraction 2.0663 2.133 -- 137 4548 0.178 0.215 -- 94.0
X Ray Diffraction 2.133 2.2092 -- 132 4627 0.1775 0.2092 -- 95.0
X Ray Diffraction 2.2092 2.2976 -- 136 4686 0.1868 0.2392 -- 96.0
X Ray Diffraction 2.2976 2.4022 -- 140 4756 0.192 0.2479 -- 97.0
X Ray Diffraction 2.4022 2.5289 -- 142 4757 0.1959 0.2595 -- 98.0
X Ray Diffraction 2.5289 2.6873 -- 140 4795 0.1908 0.2297 -- 98.0
X Ray Diffraction 2.6873 2.8947 -- 142 4817 0.1962 0.2138 -- 98.0
X Ray Diffraction 2.8947 3.186 -- 143 4879 0.1924 0.2121 -- 99.0
X Ray Diffraction 3.186 3.6469 -- 143 4936 0.1696 0.2478 -- 100.0
X Ray Diffraction 3.6469 4.5942 -- 146 4974 0.1681 0.1951 -- 100.0
X Ray Diffraction 4.5942 48.6804 -- 151 5152 0.1884 0.218 -- 99.0
Temperature Factor Modeling
Temperature Factor Value
Anisotropic B[1][1] 2.3232
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] -5.7954
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 3.4722
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.005
f_dihedral_angle_d 18.953
f_angle_d 1.446
f_chiral_restr 0.09
f_bond_d 0.006
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 6284
Nucleic Acid Atoms 855
Heterogen Atoms 4
Solvent Atoms 832

Software

Software
Software Name Purpose
PHENIX refinement version: (phenix.refine)