X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
pH 6.8
Temperature 293.0
Details 100 mM Tris-HCl, 0.2 M Li2SO4, 1.3 M K/Na tartrate, pH 6.8, VAPOR DIFFUSION, SITTING DROP, temperature 293K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 88.11 α = 90
b = 148.61 β = 113.34
c = 109.58 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS 2M-F -- 2011-12-09
Diffraction Radiation
Monochromator Protocol
DCCM SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SLS BEAMLINE X06DA 0.95000 SLS X06DA

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.44 47.65 97.2 -- -- -- -- 96463 95771 -3.0 -3.0 48.35
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.44 2.5 95.2 -- -- 1.84 -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.44 35.72 -- 0.0 96463 95737 4790 99.63 -- 0.1821 0.1804 0.2132 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.44 2.5 -- 325 6614 0.2208 0.2672 -- 99.63
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 43.52
Anisotropic B[1][1] -5.3825
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 3.8221
Anisotropic B[2][2] 3.5906
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 1.7919
RMS Deviations
Key Refinement Restraint Deviation
t_omega_torsion 2.93
t_angle_deg 1.17
t_bond_d 0.01
t_other_torsion 19.18
Coordinate Error
Parameter Value
Luzzati ESD (Observed) 0.307
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 13340
Nucleic Acid Atoms 0
Heterogen Atoms 1
Solvent Atoms 442

Software

Software
Software Name Purpose
PHASER phasing
BUSTER refinement version: 2.10.0
XDS data reduction
XSCALE data scaling