X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 115.46 α = 90
b = 122.21 β = 95.56
c = 227.82 γ = 90
Symmetry
Space Group I 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS 6M -- 2012-02-19
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON DIAMOND BEAMLINE I03 -- Diamond I03

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
3.2 29.5 99.6 0.1 -- -- 3.8 -- 51795 -- 0.0 83.8
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
3.2 3.38 98.6 0.58 -- 1.8 3.8 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 3.2 29.52 -- -- -- 49122 2639 99.5 -- 0.1605 0.15811 0.20467 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 3.203 3.285 -- 190 3512 0.27 0.327 -- 97.37
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 87.343
Anisotropic B[1][1] 3.09
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] -2.73
Anisotropic B[2][2] -1.99
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -0.82
RMS Deviations
Key Refinement Restraint Deviation
r_scbond_it 3.723
r_gen_planes_other 0.004
r_mcbond_other 3.347
r_bond_refined_d 0.012
r_mcbond_it 3.348
r_mcangle_it 5.268
r_bond_other_d 0.005
r_angle_refined_deg 1.545
r_chiral_restr 0.083
r_dihedral_angle_4_deg 19.165
r_gen_planes_refined 0.007
r_dihedral_angle_1_deg 6.634
r_dihedral_angle_3_deg 17.558
r_dihedral_angle_2_deg 35.914
r_angle_other_deg 1.331
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 19828
Nucleic Acid Atoms 0
Heterogen Atoms 109
Solvent Atoms 114

Software

Software
Software Name Purpose
REFMAC refinement version: 5.7.0032
XDS data reduction
SCALA data scaling
MOLREP phasing