X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
pH 7
Details 10% PEG4000, 300MM AMMONIUM ACETATE, 50MM HEPES PH 7.5, 5MM TCEP

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 122.74 α = 108.06
b = 139.02 β = 95.4
c = 209.55 γ = 93.85
Symmetry
Space Group P 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
2 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS 6M -- --
PIXEL DECTRIS PILATUS 6M -- --
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SLS BEAMLINE X06SA -- SLS X06SA
SYNCHROTRON SLS BEAMLINE X10SA -- SLS X10SA

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.8 40 99.9 0.24 -- -- 13.1 -- 320814 -- 1.5 --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.8 2.87 99.8 -- -- 1.52 11.5 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MAD 2.8 39.292 -- 1.99 -- 320815 6493 99.91 -- 0.1697 0.1689 0.2099 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.8 2.8318 -- 212 10451 0.318 0.3485 -- 100.0
X Ray Diffraction 2.8318 2.8651 -- 218 10460 0.3 0.3397 -- 100.0
X Ray Diffraction 2.8651 2.9 -- 236 10483 0.2858 0.3225 -- 100.0
X Ray Diffraction 2.9 2.9367 -- 236 10465 0.2654 0.3065 -- 100.0
X Ray Diffraction 2.9367 2.9754 -- 211 10453 0.2539 0.3011 -- 100.0
X Ray Diffraction 2.9754 3.0161 -- 223 10481 0.2549 0.3146 -- 100.0
X Ray Diffraction 3.0161 3.0592 -- 230 10455 0.2476 0.2703 -- 100.0
X Ray Diffraction 3.0592 3.1048 -- 236 10423 0.2469 0.3174 -- 100.0
X Ray Diffraction 3.1048 3.1533 -- 208 10561 0.2459 0.3304 -- 100.0
X Ray Diffraction 3.1533 3.205 -- 210 10452 0.2431 0.2817 -- 100.0
X Ray Diffraction 3.205 3.2602 -- 248 10466 0.2255 0.2706 -- 100.0
X Ray Diffraction 3.2602 3.3195 -- 198 10572 0.2204 0.2945 -- 100.0
X Ray Diffraction 3.3195 3.3833 -- 201 10465 0.2109 0.2587 -- 100.0
X Ray Diffraction 3.3833 3.4523 -- 217 10411 0.1994 0.2478 -- 100.0
X Ray Diffraction 3.4523 3.5274 -- 227 10479 0.1893 0.226 -- 100.0
X Ray Diffraction 3.5274 3.6094 -- 206 10565 0.1858 0.2381 -- 100.0
X Ray Diffraction 3.6094 3.6995 -- 197 10428 0.1693 0.219 -- 100.0
X Ray Diffraction 3.6995 3.7995 -- 215 10469 0.1627 0.2167 -- 100.0
X Ray Diffraction 3.7995 3.9112 -- 209 10507 0.1592 0.2062 -- 100.0
X Ray Diffraction 3.9112 4.0373 -- 217 10449 0.1526 0.2166 -- 100.0
X Ray Diffraction 4.0373 4.1815 -- 210 10538 0.1478 0.2015 -- 100.0
X Ray Diffraction 4.1815 4.3487 -- 215 10527 0.1336 0.1735 -- 100.0
X Ray Diffraction 4.3487 4.5463 -- 206 10456 0.1298 0.1591 -- 100.0
X Ray Diffraction 4.5463 4.7856 -- 220 10513 0.1255 0.1665 -- 100.0
X Ray Diffraction 4.7856 5.0849 -- 227 10452 0.1269 0.1688 -- 100.0
X Ray Diffraction 5.0849 5.4765 -- 223 10483 0.1338 0.1555 -- 100.0
X Ray Diffraction 5.4765 6.0259 -- 200 10500 0.1437 0.185 -- 100.0
X Ray Diffraction 6.0259 6.8938 -- 204 10504 0.1491 0.196 -- 100.0
X Ray Diffraction 6.8938 8.67 -- 222 10477 0.1382 0.1711 -- 100.0
X Ray Diffraction 8.67 39.2963 -- 211 10377 0.1464 0.1554 -- 99.0
RMS Deviations
Key Refinement Restraint Deviation
f_chiral_restr 0.084
f_plane_restr 0.005
f_dihedral_angle_d 16.318
f_angle_d 1.241
f_bond_d 0.01
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 68821
Nucleic Acid Atoms 0
Heterogen Atoms 24
Solvent Atoms 262

Software

Software
Software Name Purpose
XDS data reduction
XDS data scaling
autoSHARP phasing
PARROT phasing
PHENIX refinement