X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Details 100MM TRIS-HCL/BICINE PH 8.5, 20% GLYCEROL, 10% PEG4000 AND 20MM EACH OF AN ALCOHOL MIX COMPRISING 1,6-HEXANEDIOL, 1-BUTANOL, 1,2-PROPANEDIOL, 2-PROPANOL, 1,4-BUTANEDIOL AND 1,3-PROPANEDIOL.

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 116.39 α = 90
b = 69.44 β = 104.9
c = 127.09 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC CCD -- 2011-09-17
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON DIAMOND BEAMLINE I02 -- Diamond I02

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
3 48.87 99.3 0.06 -- -- 4.8 -- 39304 -- 0.0 105.46
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
3.0 3.13 98.6 1.5 -- 1.2 4.8 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
OTHER 3.003 46.784 -- 1.27 -- 39252 3832 98.28 -- 0.2172 0.2152 0.2534 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 3.0026 3.0406 -- 125 2468 0.4547 0.4662 -- 92.0
X Ray Diffraction 3.0406 3.0806 -- 113 2731 0.4293 0.4371 -- 98.0
X Ray Diffraction 3.0806 3.1228 -- 146 2618 0.383 0.4276 -- 99.0
X Ray Diffraction 3.1228 3.1674 -- 155 2692 0.3663 0.4157 -- 99.0
X Ray Diffraction 3.1674 3.2147 -- 126 2668 0.3492 0.433 -- 99.0
X Ray Diffraction 3.2147 3.2649 -- 119 2662 0.3325 0.3775 -- 99.0
X Ray Diffraction 3.2649 3.3184 -- 157 2689 0.3208 0.3872 -- 99.0
X Ray Diffraction 3.3184 3.3756 -- 149 2638 0.2996 0.3572 -- 99.0
X Ray Diffraction 3.3756 3.437 -- 140 2671 0.2907 0.3368 -- 99.0
X Ray Diffraction 3.437 3.5031 -- 130 2683 0.2821 0.3204 -- 99.0
X Ray Diffraction 3.5031 3.5746 -- 131 2657 0.2574 0.3 -- 99.0
X Ray Diffraction 3.5746 3.6522 -- 140 2747 0.2457 0.2869 -- 99.0
X Ray Diffraction 3.6522 3.7372 -- 151 2637 0.2249 0.2709 -- 99.0
X Ray Diffraction 3.7372 3.8306 -- 164 2652 0.2253 0.2745 -- 99.0
X Ray Diffraction 3.8306 3.9341 -- 173 2622 0.2183 0.255 -- 99.0
X Ray Diffraction 3.9341 4.0498 -- 145 2679 0.2153 0.2844 -- 99.0
X Ray Diffraction 4.0498 4.1805 -- 141 2697 0.1989 0.2352 -- 99.0
X Ray Diffraction 4.1805 4.3298 -- 157 2689 0.1927 0.235 -- 99.0
X Ray Diffraction 4.3298 4.503 -- 139 2685 0.1794 0.2265 -- 99.0
X Ray Diffraction 4.503 4.7077 -- 110 2695 0.1769 0.2116 -- 99.0
X Ray Diffraction 4.7077 4.9557 -- 138 2683 0.1803 0.2317 -- 99.0
X Ray Diffraction 4.9557 5.2658 -- 146 2651 0.1885 0.2386 -- 99.0
X Ray Diffraction 5.2658 5.6717 -- 151 2682 0.1982 0.2489 -- 99.0
X Ray Diffraction 5.6717 6.2413 -- 163 2641 0.2121 0.2514 -- 98.0
X Ray Diffraction 6.2413 7.1417 -- 128 2638 0.2139 0.2511 -- 98.0
X Ray Diffraction 7.1417 8.9873 -- 146 2614 0.1863 0.1901 -- 97.0
X Ray Diffraction 8.9873 46.7895 -- 149 2439 0.1804 0.22 -- 91.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 94.6
RMS Deviations
Key Refinement Restraint Deviation
f_bond_d 0.004
f_plane_restr 0.004
f_chiral_restr 0.037
f_angle_d 0.924
f_dihedral_angle_d 12.629
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 9784
Nucleic Acid Atoms 0
Heterogen Atoms 64
Solvent Atoms 0

Software

Software
Software Name Purpose
PHENIX refinement version: (PHENIX.REFINE)
XDS data reduction
Aimless data scaling