X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 242.44 α = 90
b = 242.44 β = 90
c = 110.36 γ = 120
Symmetry
Space Group H 3 2

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS 6M -- --
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SLS BEAMLINE X06SA -- SLS X06SA

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.9 40 99.6 0.27 -- -- 27.9 -- 27501 -- -- 60.72
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.9 3.07 98.4 -- -- 1.55 27.9 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.9 29.263 -- 2.01 -- 27501 1376 99.96 -- 0.2352 0.2339 0.2594 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.9 3.0036 -- 136 2587 0.3686 0.4164 -- 100.0
X Ray Diffraction 3.0036 3.1237 -- 137 2590 0.3334 0.3668 -- 100.0
X Ray Diffraction 3.1237 3.2657 -- 136 2590 0.3012 0.3208 -- 100.0
X Ray Diffraction 3.2657 3.4376 -- 137 2607 0.2593 0.2988 -- 100.0
X Ray Diffraction 3.4376 3.6526 -- 136 2588 0.2325 0.2827 -- 100.0
X Ray Diffraction 3.6526 3.934 -- 138 2613 0.2221 0.2153 -- 100.0
X Ray Diffraction 3.934 4.3288 -- 137 2608 0.1906 0.2226 -- 100.0
X Ray Diffraction 4.3288 4.9525 -- 138 2621 0.1895 0.1847 -- 100.0
X Ray Diffraction 4.9525 6.2298 -- 139 2634 0.2225 0.2508 -- 100.0
X Ray Diffraction 6.2298 29.2648 -- 142 2687 0.2286 0.2744 -- 100.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 56.08
RMS Deviations
Key Refinement Restraint Deviation
f_bond_d 0.011
f_angle_d 1.657
f_dihedral_angle_d 20.509
f_plane_restr 0.007
f_chiral_restr 0.129
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 2683
Nucleic Acid Atoms 0
Heterogen Atoms 96
Solvent Atoms 20

Software

Software
Software Name Purpose
PHENIX refinement version: (PHENIX.REFINE: 1.8.2_1309)
XDS data reduction
XSCALE data scaling
PHASER phasing version: MR