X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
pH 7
Details COCRYSTALS WERE GROWN IN 1-1.25M AMMONIUM SULFATE, 0.5-0.9M KCL, IN THE PRESENCE OF 100MM HEPES, PH 7.0, 5MM DTT AND COMPOUND

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 74.07 α = 90
b = 135.41 β = 90
c = 148.63 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC CCD -- --
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON DIAMOND BEAMLINE I02 -- Diamond I02

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.39 59.54 99.3 0.11 -- -- 3.47 -- 55186 -- -- 41.12
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.45 2.58 99.7 0.53 -- 1.42 3.52 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.45 52.462 -- 1.34 -- 55144 1999 98.99 -- 0.1981 0.1959 0.258 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.45 2.5113 -- 140 3742 0.3207 0.3714 -- 100.0
X Ray Diffraction 2.5113 2.5792 -- 143 3772 0.3093 0.3846 -- 99.0
X Ray Diffraction 2.5792 2.6551 -- 142 3782 0.2825 0.3578 -- 99.0
X Ray Diffraction 2.6551 2.7408 -- 141 3745 0.2534 0.3138 -- 99.0
X Ray Diffraction 2.7408 2.8387 -- 142 3770 0.2409 0.3194 -- 99.0
X Ray Diffraction 2.8387 2.9524 -- 141 3759 0.229 0.311 -- 99.0
X Ray Diffraction 2.9524 3.0867 -- 144 3813 0.22 0.3105 -- 99.0
X Ray Diffraction 3.0867 3.2495 -- 141 3754 0.1995 0.2577 -- 99.0
X Ray Diffraction 3.2495 3.453 -- 143 3806 0.1846 0.2645 -- 100.0
X Ray Diffraction 3.453 3.7196 -- 144 3821 0.176 0.2209 -- 100.0
X Ray Diffraction 3.7196 4.0937 -- 144 3817 0.1554 0.223 -- 99.0
X Ray Diffraction 4.0937 4.6858 -- 143 3808 0.1458 0.1945 -- 98.0
X Ray Diffraction 4.6858 5.9023 -- 144 3823 0.1706 0.2276 -- 98.0
X Ray Diffraction 5.9023 52.4738 -- 147 3933 0.1954 0.2493 -- 96.0
Temperature Factor Modeling
Temperature Factor Value
Anisotropic B[1][1] -5.0055
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] 2.8361
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 2.1693
RMS Deviations
Key Refinement Restraint Deviation
f_angle_d 0.964
f_chiral_restr 0.063
f_bond_d 0.006
f_dihedral_angle_d 15.134
f_plane_restr 0.004
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 8739
Nucleic Acid Atoms 0
Heterogen Atoms 78
Solvent Atoms 287

Software

Software
Software Name Purpose
PHENIX refinement version: (PHENIX.REFINE)
PHASER phasing