X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Details 20% PEG 4000, 100 MM HEPES (PH 7.5), 8.5% ISOPROPANOL, 15% GLYCEROL, 2 MM MNCL2

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 106.53 α = 90
b = 93.03 β = 101.36
c = 140.86 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC CCD -- --
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON DIAMOND BEAMLINE I03 -- Diamond I03

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.9 58.7 95.0 0.09 -- -- 3.6 -- 55288 -- 0.0 52.59

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 3.5 46.51 -- 0.0 -- 34141 1726 95.0 -- 0.2778 0.2763 0.3072 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 3.5 3.61 -- 163 2619 0.4834 0.5051 -- --
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 98.57
Anisotropic B[1][1] 17.0623
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 6.0158
Anisotropic B[2][2] -52.3178
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 35.2555
RMS Deviations
Key Refinement Restraint Deviation
t_bond_d 0.008
t_angle_deg 1.03
t_omega_torsion 2.74
t_other_torsion 17.93
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 15795
Nucleic Acid Atoms 114
Heterogen Atoms 99
Solvent Atoms 0

Software

Software
Software Name Purpose
BUSTER refinement version: 2.9.2