X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 36.06 α = 90
b = 57.46 β = 107.84
c = 52.34 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD MARRESEARCH -- --
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SLS BEAMLINE X10SA -- SLS X10SA

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.25 37 93.3 0.04 -- -- 3.7 -- 52485 -- 1.8 --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.25 1.33 77.6 0.65 -- 1.77 3.1 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.25 37.643 -- 1.4 -- 52464 2624 93.35 -- 0.1903 0.1895 0.2039 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.2503 1.273 -- 94 1778 0.3425 0.3832 -- 64.0
X Ray Diffraction 1.273 1.2975 -- 112 2139 0.3125 0.2755 -- 76.0
X Ray Diffraction 1.2975 1.324 -- 134 2538 0.2907 0.2906 -- 91.0
X Ray Diffraction 1.324 1.3528 -- 139 2634 0.2711 0.2892 -- 94.0
X Ray Diffraction 1.3528 1.3842 -- 140 2673 0.2634 0.2816 -- 95.0
X Ray Diffraction 1.3842 1.4189 -- 139 2633 0.258 0.2884 -- 95.0
X Ray Diffraction 1.4189 1.4572 -- 141 2677 0.239 0.2755 -- 95.0
X Ray Diffraction 1.4572 1.5001 -- 140 2662 0.2096 0.2594 -- 95.0
X Ray Diffraction 1.5001 1.5485 -- 141 2687 0.2014 0.2032 -- 96.0
X Ray Diffraction 1.5485 1.6039 -- 143 2700 0.1951 0.2305 -- 97.0
X Ray Diffraction 1.6039 1.6681 -- 142 2703 0.1905 0.2026 -- 96.0
X Ray Diffraction 1.6681 1.744 -- 144 2742 0.1923 0.2315 -- 97.0
X Ray Diffraction 1.744 1.836 -- 142 2704 0.1818 0.2187 -- 97.0
X Ray Diffraction 1.836 1.951 -- 145 2744 0.1801 0.2127 -- 98.0
X Ray Diffraction 1.951 2.1016 -- 145 2748 0.173 0.1858 -- 98.0
X Ray Diffraction 2.1016 2.3131 -- 145 2759 0.1501 0.1876 -- 98.0
X Ray Diffraction 2.3131 2.6477 -- 146 2772 0.1608 0.16 -- 98.0
X Ray Diffraction 2.6477 3.3355 -- 147 2797 0.1707 0.1567 -- 98.0
X Ray Diffraction 3.3355 37.6597 -- 145 2750 0.1949 0.2076 -- 95.0
RMS Deviations
Key Refinement Restraint Deviation
f_bond_d 0.009
f_angle_d 1.312
f_plane_restr 0.006
f_dihedral_angle_d 12.716
f_chiral_restr 0.066
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 1722
Nucleic Acid Atoms 0
Heterogen Atoms 0
Solvent Atoms 256

Software

Software
Software Name Purpose
PHENIX refinement version: (PHENIX.REFINE: 1.8.1_1168)
XDS data reduction
XSCALE data scaling
MOLREP phasing