X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
pH 8.5
Temperature 293.0
Details 0.1M Tris-HCl, 2.9M sodium formate, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 121.74 α = 90
b = 62.53 β = 127.97
c = 79.98 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315r -- 2012-03-16
Diffraction Radiation
Monochromator Protocol
Si(111) SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 0.9537 Australian Synchrotron MX2

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.97 50 98.8 -- 0.14 -- 3.8 33311 33311 0.0 -3.0 --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.97 2.0 77.0 -- 0.66 2.1 3.3 1295

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.975 39.933 -- 1.15 -- 33300 3235 97.32 -- 0.2031 0.201 0.2406 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.9751 2.0046 -- 141 2384 0.2955 0.3575 -- 88.0
X Ray Diffraction 2.0046 2.0359 -- 120 2618 0.2822 0.3191 -- 96.0
X Ray Diffraction 2.0359 2.0693 -- 144 2561 0.2695 0.2876 -- 96.0
X Ray Diffraction 2.0693 2.1049 -- 138 2586 0.2659 0.3195 -- 96.0
X Ray Diffraction 2.1049 2.1432 -- 147 2571 0.2467 0.3197 -- 97.0
X Ray Diffraction 2.1432 2.1844 -- 164 2565 0.2316 0.2686 -- 96.0
X Ray Diffraction 2.1844 2.229 -- 144 2598 0.2178 0.2421 -- 97.0
X Ray Diffraction 2.229 2.2775 -- 161 2561 0.2241 0.2461 -- 97.0
X Ray Diffraction 2.2775 2.3305 -- 118 2651 0.2254 0.2815 -- 97.0
X Ray Diffraction 2.3305 2.3887 -- 142 2644 0.2317 0.2937 -- 97.0
X Ray Diffraction 2.3887 2.4533 -- 115 2637 0.2156 0.2566 -- 98.0
X Ray Diffraction 2.4533 2.5255 -- 141 2641 0.2244 0.2612 -- 98.0
X Ray Diffraction 2.5255 2.607 -- 100 2682 0.2127 0.2573 -- 98.0
X Ray Diffraction 2.607 2.7001 -- 136 2610 0.2198 0.287 -- 98.0
X Ray Diffraction 2.7001 2.8082 -- 176 2615 0.2123 0.2561 -- 99.0
X Ray Diffraction 2.8082 2.936 -- 137 2677 0.2055 0.2284 -- 99.0
X Ray Diffraction 2.936 3.0907 -- 144 2698 0.2053 0.2309 -- 99.0
X Ray Diffraction 3.0907 3.2843 -- 141 2656 0.199 0.2495 -- 99.0
X Ray Diffraction 3.2843 3.5377 -- 157 2615 0.1853 0.2712 -- 99.0
X Ray Diffraction 3.5377 3.8935 -- 181 2643 0.1708 0.206 -- 99.0
X Ray Diffraction 3.8935 4.4562 -- 119 2720 0.1577 0.2003 -- 99.0
X Ray Diffraction 4.4562 5.6119 -- 147 2669 0.1651 0.178 -- 99.0
X Ray Diffraction 5.6119 39.9407 -- 122 2692 0.1776 0.1886 -- 99.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 31.3538
RMS Deviations
Key Refinement Restraint Deviation
f_angle_d 0.991
f_plane_restr 0.004
f_bond_d 0.007
f_dihedral_angle_d 16.981
f_chiral_restr 0.042
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 2295
Nucleic Acid Atoms 0
Heterogen Atoms 39
Solvent Atoms 321

Software

Software
Software Name Purpose
HKL-2000 data collection
PHASER phasing
PHENIX refinement version: (phenix.refine: 1.8.1_1168)
HKL-2000 data reduction
HKL-2000 data scaling