X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 9
Temperature 293.0
Details 0.6-1.2M sodium/potassium tartrate, 0.16-0.2M lithium sulfate, 0.1M CHES (pH 8.9-9.9). , VAPOR DIFFUSION, HANGING DROP, temperature 293K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 93.57 α = 90
b = 88.63 β = 104.24
c = 70.68 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
IMAGE PLATE RIGAKU RAXIS IV++ -- 2010-07-06
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
ROTATING ANODE RIGAKU MICROMAX-007 1.54 -- --

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2 50 99.4 -- 0.183 -- 4.3 -- 37627 -- -- 12.4
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.0 2.12 97.8 -- 0.498 3.07 4.1 5945

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.0 45.347 -- 1.99 -- 37575 1879 99.33 -- 0.2369 0.2353 0.2672 random
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.0003 2.0544 -- 139 2631 0.2487 0.2838 -- 95.0
X Ray Diffraction 2.0544 2.1149 -- 145 2757 0.2447 0.2737 -- 100.0
X Ray Diffraction 2.1149 2.1831 -- 144 2736 0.2431 0.246 -- 100.0
X Ray Diffraction 2.1831 2.2612 -- 145 2750 0.238 0.2713 -- 100.0
X Ray Diffraction 2.2612 2.3517 -- 145 2754 0.226 0.2823 -- 100.0
X Ray Diffraction 2.3517 2.4587 -- 145 2754 0.239 0.2624 -- 100.0
X Ray Diffraction 2.4587 2.5883 -- 145 2756 0.2395 0.2983 -- 100.0
X Ray Diffraction 2.5883 2.7505 -- 144 2737 0.2463 0.2708 -- 100.0
X Ray Diffraction 2.7505 2.9628 -- 146 2773 0.24 0.2795 -- 100.0
X Ray Diffraction 2.9628 3.2609 -- 144 2734 0.2409 0.2772 -- 100.0
X Ray Diffraction 3.2609 3.7325 -- 145 2772 0.2172 0.2494 -- 99.0
X Ray Diffraction 3.7325 4.7018 -- 147 2776 0.2112 0.2341 -- 100.0
X Ray Diffraction 4.7018 45.3591 -- 145 2766 0.2572 0.2859 -- 98.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 13.9521
RMS Deviations
Key Refinement Restraint Deviation
f_bond_d 0.002
f_plane_restr 0.002
f_dihedral_angle_d 10.798
f_chiral_restr 0.042
f_angle_d 0.611
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 3668
Nucleic Acid Atoms 0
Heterogen Atoms 0
Solvent Atoms 407

Software

Software
Software Name Purpose
CrystalClear data collection
MOLREP phasing
PHENIX refinement version: (phenix.refine: 1.8_1069)
XDS data reduction
XDS data scaling