X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 8.21
Temperature 277.0
Details 20% (w/v) polyethylene glycol monomethyl ether and 0.2M Sodium Acetate in 0.1 M MES buffer (pH 8.21), VAPOR DIFFUSION, HANGING DROP, temperature 277K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 128.02 α = 90
b = 128.02 β = 90
c = 98.84 γ = 120
Symmetry
Space Group P 61

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
IMAGE PLATE RIGAKU RAXIS IV++ -- 2011-04-27
Diffraction Radiation
Monochromator Protocol
Osmic VariMax SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
ROTATING ANODE RIGAKU MICROMAX-007 HF 1.5418 -- --

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.62 111 95.4 -- -- -- -- -- 112286 4.89 23.9 --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.62 1.69 77.5 -- -- -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.62 64.06 -- 1.06 -- 112286 1096 95.5 -- 0.169 0.169 0.223 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.62 1.6938 -- 146 28385 0.2542 0.3278 -- 99.0
X Ray Diffraction 1.6938 1.7831 -- 141 28697 0.2133 0.2633 -- 100.0
X Ray Diffraction 1.7831 1.8948 -- 144 28373 0.1939 0.2381 -- 99.0
X Ray Diffraction 1.8948 2.0411 -- 121 23776 0.1906 0.2686 -- 83.0
X Ray Diffraction 2.0411 2.2465 -- 131 27018 0.1808 0.2029 -- 96.0
X Ray Diffraction 2.2465 2.5716 -- 131 26492 0.1609 0.206 -- 97.0
X Ray Diffraction 2.5716 3.2399 -- 143 28644 0.1475 0.2577 -- 100.0
X Ray Diffraction 3.2399 64.06 -- 139 27432 0.1574 0.1896 -- 96.0
Temperature Factor Modeling
Temperature Factor Value
Anisotropic B[1][1] 2.1166
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] 2.1166
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -4.2333
RMS Deviations
Key Refinement Restraint Deviation
f_dihedral_angle_d 13.939
f_plane_restr 0.002
f_chiral_restr 0.043
f_angle_d 0.814
f_bond_d 0.025
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 6819
Nucleic Acid Atoms 0
Heterogen Atoms 64
Solvent Atoms 1241

Software

Software
Software Name Purpose
CrystalClear data collection
PHASER phasing
PHENIX refinement version: (phenix.refine: 1.7.1_743)
CrystalClear data reduction
CrystalClear data scaling