X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 9
Temperature 291.0
Details 0.1M BIS-TRIS propane(pH 9.0), 10% v/v Jeffamine ED-2001 (pH 7.0) , VAPOR DIFFUSION, HANGING DROP, temperature 291K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 90.45 α = 90
b = 140.18 β = 101.22
c = 90.3 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315 -- 2011-01-24
Diffraction Radiation
Monochromator Protocol
GRAPHITE SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SSRF BEAMLINE BL17U 0.9791 SSRF BL17U

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.2 50 99.9 -- -- -- -- 111014 111014 2.0 2.0 11.77
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.2 2.28 99.9 -- -- -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.201 43.172 -- 0.07 103790 103790 5184 93.08 -- 0.1566 0.1548 0.191 Random
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.2013 2.2263 -- 120 2756 0.1709 0.2156 -- 79.0
X Ray Diffraction 2.2263 2.2525 -- 161 3126 0.1637 0.2042 -- 87.0
X Ray Diffraction 2.2525 2.28 -- 166 3068 0.1647 0.2131 -- 89.0
X Ray Diffraction 2.28 2.3088 -- 145 3115 0.1712 0.2269 -- 88.0
X Ray Diffraction 2.3088 2.3392 -- 168 3126 0.1719 0.226 -- 89.0
X Ray Diffraction 2.3392 2.3713 -- 170 3160 0.1635 0.2061 -- 89.0
X Ray Diffraction 2.3713 2.4051 -- 165 3141 0.1573 0.2095 -- 90.0
X Ray Diffraction 2.4051 2.441 -- 168 3239 0.1596 0.2102 -- 90.0
X Ray Diffraction 2.441 2.4792 -- 146 3151 0.1624 0.2105 -- 90.0
X Ray Diffraction 2.4792 2.5198 -- 167 3216 0.1658 0.2135 -- 91.0
X Ray Diffraction 2.5198 2.5633 -- 168 3208 0.1658 0.2154 -- 91.0
X Ray Diffraction 2.5633 2.6099 -- 175 3258 0.1633 0.2071 -- 92.0
X Ray Diffraction 2.6099 2.66 -- 189 3258 0.1617 0.2041 -- 93.0
X Ray Diffraction 2.66 2.7143 -- 165 3222 0.1622 0.2043 -- 93.0
X Ray Diffraction 2.7143 2.7733 -- 165 3335 0.1623 0.2499 -- 93.0
X Ray Diffraction 2.7733 2.8378 -- 155 3103 0.1836 0.207 -- 88.0
X Ray Diffraction 2.8378 2.9088 -- 143 3114 0.1724 0.2276 -- 87.0
X Ray Diffraction 2.9088 2.9874 -- 164 3305 0.1606 0.1978 -- 95.0
X Ray Diffraction 2.9874 3.0753 -- 193 3367 0.1595 0.1872 -- 96.0
X Ray Diffraction 3.0753 3.1745 -- 199 3437 0.1559 0.2008 -- 97.0
X Ray Diffraction 3.1745 3.288 -- 216 3386 0.152 0.1889 -- 97.0
X Ray Diffraction 3.288 3.4196 -- 189 3460 0.1412 0.1658 -- 98.0
X Ray Diffraction 3.4196 3.5751 -- 211 3463 0.1376 0.1756 -- 99.0
X Ray Diffraction 3.5751 3.7635 -- 191 3494 0.1339 0.1615 -- 99.0
X Ray Diffraction 3.7635 3.9991 -- 171 3483 0.1294 0.1599 -- 98.0
X Ray Diffraction 3.9991 4.3077 -- 188 3528 0.1291 0.1452 -- 98.0
X Ray Diffraction 4.3077 4.7407 -- 169 3485 0.12 0.1496 -- 98.0
X Ray Diffraction 4.7407 5.4255 -- 177 3498 0.1267 0.1517 -- 99.0
X Ray Diffraction 5.4255 6.8312 -- 194 3532 0.1583 0.1774 -- 99.0
X Ray Diffraction 6.8312 43.1804 -- 186 3572 0.1939 0.204 -- 99.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 15.7281
Anisotropic B[1][1] 0.2291
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 3.7623
Anisotropic B[2][2] -3.5553
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 3.3262
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.007
f_bond_d 0.006
f_dihedral_angle_d 24.135
f_angle_d 0.984
f_chiral_restr 0.078
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 12068
Nucleic Acid Atoms 0
Heterogen Atoms 420
Solvent Atoms 1394

Software

Software
Software Name Purpose
Blu-Ice data collection
PHASER phasing
PHENIX refinement version: (phenix.refine: 1.5_2)
HKL-2000 data reduction
HKL-2000 data scaling