X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 8.5
Temperature 292.0
Details 20% PEG-ME 2000, 0.1M Tris-Cl, 0.2M Trimethylamine-N-oxide, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 292K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 71.36 α = 90
b = 93.39 β = 90
c = 118.08 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315r -- 2009-10-07
Diffraction Radiation
Monochromator Protocol
Synchrotron SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ALS BEAMLINE 8.3.1 1.1159 ALS 8.3.1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.45 23 90.3 0.096 0.096 -- 6.5 126263 126263 1.9 1.9 27.0
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.45 1.49 81.0 0.748 0.748 1.9 3.4 7983

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.45 23.0 -- 0.06 126263 126247 2000 90.26 -- 0.1938 0.1935 0.2163 Random
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.4501 1.4864 -- 126 7857 0.2981 0.3321 -- 81.0
X Ray Diffraction 1.4864 1.5266 -- 132 8139 0.2666 0.3275 -- 84.0
X Ray Diffraction 1.5266 1.5715 -- 133 8333 0.2395 0.2858 -- 86.0
X Ray Diffraction 1.5715 1.6222 -- 133 8271 0.2068 0.243 -- 85.0
X Ray Diffraction 1.6222 1.6801 -- 130 7998 0.1799 0.2056 -- 82.0
X Ray Diffraction 1.6801 1.7474 -- 131 8177 0.1745 0.2124 -- 84.0
X Ray Diffraction 1.7474 1.8269 -- 135 8421 0.1517 0.1956 -- 86.0
X Ray Diffraction 1.8269 1.9232 -- 142 8792 0.1431 0.1842 -- 90.0
X Ray Diffraction 1.9232 2.0436 -- 149 9239 0.1423 0.1776 -- 94.0
X Ray Diffraction 2.0436 2.2013 -- 155 9598 0.1564 0.1857 -- 98.0
X Ray Diffraction 2.2013 2.4226 -- 154 9620 0.1758 0.1782 -- 97.0
X Ray Diffraction 2.4226 2.7726 -- 157 9707 0.2152 0.2161 -- 98.0
X Ray Diffraction 2.7726 3.4912 -- 158 9887 0.2021 0.2609 -- 99.0
X Ray Diffraction 3.4912 23.0063 -- 165 10208 0.2021 0.2115 -- 99.0
Temperature Factor Modeling
Temperature Factor Value
Anisotropic B[1][1] 7.6285
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] 8.3831
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 34.0534
RMS Deviations
Key Refinement Restraint Deviation
f_chiral_restr 0.08
f_dihedral_angle_d 11.733
f_plane_restr 0.005
f_bond_d 0.008
f_angle_d 1.151
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 5568
Nucleic Acid Atoms 0
Heterogen Atoms 17
Solvent Atoms 348

Software

Software
Software Name Purpose
HKL-2000 data collection
PHASER phasing
PHENIX refinement version: (phenix.refine: 1.7_650)
HKL-2000 data reduction
HKL-2000 data scaling