X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 68.28 α = 106.33
b = 93.04 β = 90.07
c = 117.75 γ = 90
Symmetry
Space Group P 1

Diffraction

Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ALS BEAMLINE 8.2.1 -- ALS 8.2.1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2 46 82.15 -- -- -- -- 166248 154317 1.0 1.0 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.0 29.926 -- 0.08 -- 154317 1829 82.15 -- 0.2017 0.2011 0.2488 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.0 2.0541 -- 133 11099 0.2445 0.2981 -- 78.0
X Ray Diffraction 2.0541 2.1145 -- 152 12131 0.2483 0.2989 -- 85.0
X Ray Diffraction 2.1145 2.1828 -- 149 12382 0.2371 0.2986 -- 87.0
X Ray Diffraction 2.1828 2.2607 -- 33 3213 0.3431 0.4388 -- 24.0
X Ray Diffraction 2.2607 2.3512 -- 102 8622 0.2513 0.3112 -- 74.0
X Ray Diffraction 2.3512 2.4582 -- 158 13237 0.223 0.2441 -- 93.0
X Ray Diffraction 2.4582 2.5877 -- 159 13183 0.2401 0.3127 -- 93.0
X Ray Diffraction 2.5877 2.7498 -- 163 13575 0.2212 0.2573 -- 95.0
X Ray Diffraction 2.7498 2.9619 -- 165 13903 0.2151 0.3203 -- 97.0
X Ray Diffraction 2.9619 3.2596 -- 162 13893 0.2125 0.257 -- 98.0
X Ray Diffraction 3.2596 3.7305 -- 127 10549 0.1962 0.2718 -- 74.0
X Ray Diffraction 3.7305 4.6972 -- 155 12519 0.1496 0.168 -- 88.0
X Ray Diffraction 4.6972 29.9292 -- 171 14182 0.1649 0.2008 -- 99.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 32.9238
Anisotropic B[1][1] -0.1039
Anisotropic B[1][2] -2.156
Anisotropic B[1][3] -0.5377
Anisotropic B[2][2] -2.3046
Anisotropic B[2][3] 3.2444
Anisotropic B[3][3] 2.4085
RMS Deviations
Key Refinement Restraint Deviation
f_chiral_restr 0.05
f_bond_d 0.003
f_angle_d 0.827
f_dihedral_angle_d 15.056
f_plane_restr 0.003
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 20120
Nucleic Acid Atoms 0
Heterogen Atoms 216
Solvent Atoms 1495

Software

Software
Software Name Purpose
AMoRE phasing
PHENIX refinement version: 1.6.1_357
PDB_EXTRACT data extraction version: 3.10