X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 6.5
Temperature 287.0
Details 7mg/ml cSRcL317I, 0.5mM pyrazolopyrimidine 5, 0.1M MES, 0.2M sodium acetate, 4% glycerol, 12% PEG 4000, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 287K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 42.27 α = 79.48
b = 63.49 β = 90.09
c = 73.45 γ = 89.41
Symmetry
Space Group P 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD MARMOSAIC 225 mm CCD -- 2009-04-28
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SLS BEAMLINE X06DA 1.0 SLS X06DA

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.75 32.94 96.0 0.165 0.117 -- 3.9 -- 18749 -- 2.0 52.9
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.75 2.9 95.2 0.761 0.538 2.22 3.9 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.75 32.945 -- 2.07 -- 18749 938 96.07 -- 0.1944 0.1924 0.2323 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.75 2.8949 -- 132 2497 0.2921 0.332 -- 95.0
X Ray Diffraction 2.8949 3.0762 -- 134 2566 0.2337 0.2803 -- 96.0
X Ray Diffraction 3.0762 3.3135 -- 134 2539 0.2038 0.252 -- 96.0
X Ray Diffraction 3.3135 3.6466 -- 135 2556 0.1827 0.2129 -- 96.0
X Ray Diffraction 3.6466 4.1733 -- 133 2529 0.1782 0.2151 -- 96.0
X Ray Diffraction 4.1733 5.2545 -- 134 2569 0.1582 0.1885 -- 96.0
X Ray Diffraction 5.2545 32.9471 -- 136 2555 0.1858 0.2426 -- 97.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 39.21
Anisotropic B[1][1] 3.5435
Anisotropic B[1][2] -2.2016
Anisotropic B[1][3] -2.474
Anisotropic B[2][2] -7.5176
Anisotropic B[2][3] 2.3592
Anisotropic B[3][3] 3.9741
RMS Deviations
Key Refinement Restraint Deviation
f_chiral_restr 0.055
f_angle_d 0.825
f_bond_d 0.005
f_plane_restr 0.004
f_dihedral_angle_d 15.673
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 4033
Nucleic Acid Atoms 0
Heterogen Atoms 66
Solvent Atoms 110

Software

Software
Software Name Purpose
PHASER phasing
PHENIX refinement version: (phenix.refine: 1.6.2_432)
MOSFLM data reduction
SCALA data scaling