X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
pH 6
Temperature 293.0
Details 2-Methyl-2,4-Pentanediol 12.4% v/v, MES 124mM pH 6.0, ethyl acetate 1% v/v, VAPOR DIFFUSION, SITTING DROP, temperature 293K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 155.54 α = 90
b = 159.6 β = 90
c = 139.26 γ = 90
Symmetry
Space Group C 2 2 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315 -- 2009-07-08
Diffraction Radiation
Monochromator Protocol
Si(111) SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON DIAMOND BEAMLINE I03 0.97630 Diamond I03

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.19 55 94.4 -- -- -- -- 88386 82704 -3.0 -3.0 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.195 39.899 -- 1.33 88386 82680 4197 93.61 0.1916 0.1916 0.1896 0.23 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.1954 2.2204 -- 105 2419 0.3004 0.3511 -- 86.0
X Ray Diffraction 2.2204 2.2465 -- 151 2667 0.2856 0.3328 -- 96.0
X Ray Diffraction 2.2465 2.2739 -- 139 2638 0.2853 0.3046 -- 96.0
X Ray Diffraction 2.2739 2.3027 -- 144 2643 0.2508 0.2884 -- 96.0
X Ray Diffraction 2.3027 2.333 -- 142 2648 0.2392 0.3071 -- 96.0
X Ray Diffraction 2.333 2.3649 -- 138 2656 0.2352 0.264 -- 95.0
X Ray Diffraction 2.3649 2.3987 -- 141 2658 0.2366 0.2699 -- 96.0
X Ray Diffraction 2.3987 2.4345 -- 148 2624 0.2335 0.2836 -- 95.0
X Ray Diffraction 2.4345 2.4725 -- 133 2643 0.2216 0.2641 -- 95.0
X Ray Diffraction 2.4725 2.5131 -- 140 2648 0.2204 0.2463 -- 95.0
X Ray Diffraction 2.5131 2.5564 -- 141 2590 0.2193 0.2921 -- 94.0
X Ray Diffraction 2.5564 2.6029 -- 150 2623 0.2131 0.2799 -- 95.0
X Ray Diffraction 2.6029 2.6529 -- 144 2660 0.2179 0.2487 -- 95.0
X Ray Diffraction 2.6529 2.707 -- 145 2607 0.225 0.2727 -- 95.0
X Ray Diffraction 2.707 2.7659 -- 130 2614 0.2061 0.2758 -- 94.0
X Ray Diffraction 2.7659 2.8302 -- 147 2603 0.1975 0.2584 -- 94.0
X Ray Diffraction 2.8302 2.901 -- 126 2638 0.1911 0.2407 -- 94.0
X Ray Diffraction 2.901 2.9794 -- 143 2623 0.1954 0.2234 -- 94.0
X Ray Diffraction 2.9794 3.067 -- 164 2608 0.1929 0.2608 -- 94.0
X Ray Diffraction 3.067 3.166 -- 140 2611 0.1898 0.243 -- 94.0
X Ray Diffraction 3.166 3.2791 -- 165 2600 0.1763 0.2178 -- 94.0
X Ray Diffraction 3.2791 3.4103 -- 144 2622 0.1714 0.2489 -- 94.0
X Ray Diffraction 3.4103 3.5654 -- 136 2606 0.1668 0.2179 -- 93.0
X Ray Diffraction 3.5654 3.7533 -- 140 2603 0.1691 0.2001 -- 93.0
X Ray Diffraction 3.7533 3.9882 -- 141 2639 0.1663 0.2027 -- 93.0
X Ray Diffraction 3.9882 4.2958 -- 120 2602 0.1547 0.1925 -- 92.0
X Ray Diffraction 4.2958 4.7275 -- 127 2554 0.1247 0.1655 -- 90.0
X Ray Diffraction 4.7275 5.4102 -- 139 2573 0.1363 0.1438 -- 91.0
X Ray Diffraction 5.4102 6.8107 -- 144 2628 0.1676 0.1997 -- 92.0
X Ray Diffraction 6.8107 39.9056 -- 130 2635 0.1778 0.1978 -- 88.0
Temperature Factor Modeling
Temperature Factor Value
Anisotropic B[1][1] 13.7873
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] -4.8816
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -8.9057
RMS Deviations
Key Refinement Restraint Deviation
f_dihedral_angle_d 17.139
f_plane_restr 0.003
f_angle_d 0.919
f_chiral_restr 0.062
f_bond_d 0.005
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 9069
Nucleic Acid Atoms 0
Heterogen Atoms 142
Solvent Atoms 389

Software

Software
Software Name Purpose
GDA data collection
PHASER phasing
PHENIX refinement version: (phenix.refine)
MOSFLM data reduction
SCALA data scaling